Gene
RNA
| Item | Value |
|---|---|
| gene id | G14096 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 1749106 ~ 1753231 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU15769 | False | 865 | lncRNA | 0.48 | 8 | 1749106 | 1753231 |
| TU15770 | True | 285 | lncRNA | 0.35 | 2 | 1750193 | 1750729 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_01707363_01743870 | VWA5B1 | coding | downstream | 5236 | 1707089 ~ 1743870 (-) |
| CI01000001_01637015_01638058 | FAM43B | coding | downstream | 111048 | 1636695 ~ 1638058 (-) |
| CI01000001_01582644_01584095 | NA | coding | downstream | 164666 | 1582644 ~ 1584440 (-) |
| CI01000001_01565290_01569360 | PINK1 | coding | downstream | 179746 | 1565290 ~ 1569360 (-) |
| CI01000001_01555180_01558113 | AGMAT | coding | downstream | 190993 | 1554301 ~ 1558113 (-) |
| CI01000001_01757774_01758445 | NA | coding | upstream | 3958 | 1757189 ~ 1759443 (-) |
| CI01000001_01760676_01761671 | CPTP | coding | upstream | 6935 | 1760166 ~ 1761671 (-) |
| CI01000001_01772744_01773670 | NA | coding | upstream | 19100 | 1772331 ~ 1773670 (-) |
| CI01000001_01873684_01874535 | NA | coding | upstream | 120409 | 1873640 ~ 1874535 (-) |
| CI01000001_01902970_01917410 | MARCH9 | coding | upstream | 149198 | 1902429 ~ 1917454 (-) |
| G13679 | NA | non-coding | downstream | 72213 | 1676539 ~ 1676893 (-) |
| G13678 | NA | non-coding | downstream | 73028 | 1675806 ~ 1676078 (-) |
| G13674 | NA | non-coding | downstream | 82047 | 1666424 ~ 1667059 (-) |
| G13656 | NA | non-coding | downstream | 88397 | 1660255 ~ 1660709 (-) |
| G13671 | NA | non-coding | downstream | 99676 | 1649192 ~ 1649430 (-) |
| G14100 | NA | non-coding | upstream | 1216 | 1754447 ~ 1754991 (-) |
| G14104 | NA | non-coding | upstream | 14725 | 1763669 ~ 1771468 (-) |
| G14112 | NA | non-coding | upstream | 114404 | 1867635 ~ 1871566 (-) |
| G14257 | NA | non-coding | upstream | 140475 | 1893706 ~ 1896090 (-) |
| G14259 | NA | non-coding | upstream | 167364 | 1920595 ~ 1920846 (-) |
| CI01000001_00362143_00378213 | NA | other | downstream | 1351973 | 361614 ~ 378213 (-) |
| CI01000001_00238241_00249437 | NA | other | downstream | 1491589 | 238241 ~ 249437 (-) |
| CI01000001_00124107_00131285 | ELOVL4B | other | downstream | 1614181 | 122814 ~ 131380 (-) |
| G14219 | NA | other | upstream | 240979 | 1994210 ~ 1994898 (-) |
| G14228 | NA | other | upstream | 302743 | 2055974 ~ 2056478 (-) |
| CI01000001_02258523_02262621 | NA | other | upstream | 506158 | 2258442 ~ 2263103 (-) |
| CI01000001_04395469_04399381 | FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A | other | upstream | 2639083 | 4392314 ~ 4399804 (-) |
