G13726


Basic Information

Item Value
gene id G13726
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 1981627 ~ 1983612 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU15336
TTGTAATTACAGTCGTTACATGCATTATGTGAACACAATGTAACAACTTGTCTTAATGTAACAACATCTTAAGGTGTTAAAACAGCTCTAAAAATACCGTGTAAATTACAACTGTTATGGATCTAATTGTGCCTTACAAACCTAAAAGGAATAAATAACAGAAACCATGTTTTTGGAAATCTCTGAAAAATATATTTGGTCCAAACACTGATTTGCAAAATAAATAAAATGCAACAATAAGGCATTTCATACTAAATCAGCTCAGTGTTGCTAGAGTATTTCTACTACAAACTACAAAATTCCTCTTTTCGGCATTAAGGCTAACCGCATAAAATAGCTCAAATAAGAGAAAATAATAGTGTGTGCTCCATCCATCCATATAAACAGTCAGCATTCAATTCATAATATTACTTTAATCTAGACCTTTACTGTACACTTAGGGTCCCCGGCTGGTAATTTTTCTTTCTTTTCTTTTTCTTTTTTTTTTTTTTTTTACAAAGTATCTCGTTTCCCTCCTCACAACATTCTAGTGCTGCATATATCAAGTGAAGCTAGCATGCACTTAAAGCATCAGACAACATGAGTTTCTGCTATTCCTCCAGAATCGGTTCAGCAAATGGTTAAGGCGGTGGATTCTCTCTCTGCCAATCCAAAGTCCAAAGAAAGAGAGGGAGAGAGTGAGAGAGCACACCAAGAACAAGTTATGTCACTGCTACAGGTTTGGAGTCATATCTCCTTAAAAGATTAGGCAATGTTCCCATGTTTGTGGGTTGTGATTCACGTGAATCTAGTTCTATTAATCTGTGAAGATGCACTTAATGAATGTAGCTGTAGTGTGGATGAGAATGTCAACATGTCAACATGTCATGCTTAAATATCGTGTTATGAAACGCTATGAAAATATGAAGCACAGCCAAAAGGCGCTAAAAGATATCAACTAATATGACAACAGTAGATAGAAACTGCAAAGACATGTTGAGTGAATCTGACAAAACCTGTGAAGGACATGTCCGGTGTATATTTCATCCTAAAATTCAAAAGAAAGAAATAAGATGTTATATTTTGCTTAAAAATTAAGCCTATTAATCCTTAATTTTTTTTTTTTTGTATTCACAAATTATTTTCATTACAATTAAGCACATTTCCCCTCCAAATTCTCATTATATGCAAAAGAAATAATAGTATATGCACTGTATTATTGTAATGAGCATGTGTGTGTTGTAAAATCTGTAAAATCGATTAATCGCATCTAACACACATTATGTATGCATATATATATAAATACACATATATATAAATAAATGACTATTGTTGCAATGAGAATCTCAAAAAAAAAAAAATGTAAAAAAACATCTGGACACATTACAGTAATGACAATTTGGGGAGGGGGCAAATGTGTTTTACTGTCATAAAAATAATGTCAAAATGAAATATAACTAAATGGTCCTAAAAAAGGCCTAATTTCTGCAATGCAAAATATAATTTAATTCTTTTATTTTGATTTTGGGGTAAAATGTGACCTTAAAATGTTGATAAGGACACCCAGAAGTGGTTACGCAAAAATGTTGGAGATGAATTCACGGAATCGTTTGGCATACTGCTCTGGATGAACCGTAGATATTTCAGCACCAGCCTGAAAGGAAGGAAAAGGATGAGTCATGTTATTATAACCTCCTATATCTCAAATCATGTCAGGCATGTACGCATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU15336 True 1709 lncRNA 0.33 2 1981627 1983612

Neighbor

gene id symbol gene type direction distance location
CI01000001_01955349_01972242 ZBTB39 coding upstream 8617 1955349 ~ 1973010 (+)
CI01000001_01918301_01923330 NA coding upstream 58248 1918003 ~ 1923379 (+)
CI01000001_01878297_01894123 HIPK1A coding upstream 85543 1878297 ~ 1896084 (+)
CI01000001_01868471_01873459 UBE2J2, UBE2J2.L coding upstream 108108 1868471 ~ 1873519 (+)
CI01000001_01833609_01860272 CENB5, ACAP3 coding upstream 120674 1833261 ~ 1860953 (+)
CI01000001_02009224_02019961 SPRYD3 coding downstream 23482 2007094 ~ 2020191 (+)
CI01000001_02084996_02088477 NA coding downstream 101384 2084996 ~ 2089332 (+)
CI01000001_02090800_02101722 CSAD coding downstream 107075 2090687 ~ 2101866 (+)
CI01000001_02106280_02114656 ZNF740B, ZNF740 coding downstream 122367 2105979 ~ 2115251 (+)
CI01000001_02152125_02157921 NFE2 coding downstream 168409 2151932 ~ 2158623 (+)
G13791 NA non-coding upstream 6429 1974963 ~ 1975198 (+)
G13789 NA non-coding upstream 42308 1939110 ~ 1939319 (+)
G13721 NA non-coding upstream 48214 1929504 ~ 1933413 (+)
G13778 NA non-coding upstream 74509 1902271 ~ 1907118 (+)
G13763 NA non-coding upstream 201268 1780156 ~ 1780359 (+)
G13796 NA non-coding downstream 20549 2004161 ~ 2005163 (+)
G13722 NA non-coding downstream 87542 2071154 ~ 2076549 (+)
G13735 NA non-coding downstream 118545 2102157 ~ 2103468 (+)
G13812 NA non-coding downstream 160045 2143657 ~ 2143868 (+)
G13813 NA non-coding downstream 163589 2147201 ~ 2147756 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 310623 1667762 ~ 1671167 (+)
G13051 NA other upstream 936475 1043713 ~ 1045152 (+)
CI01000001_00483853_00488761 VWA1 other upstream 1489570 483853 ~ 488825 (+)
G12614 NA other upstream 1670686 309144 ~ 310941 (+)
CI01000001_03618075_03620436 NA other downstream 1632636 3618075 ~ 3621451 (+)
G15794 NA other downstream 3077606 5061218 ~ 5064704 (+)
CI01000001_05279884_05287123 NA other downstream 3303137 5279837 ~ 5287698 (+)
G15995 NA other downstream 3728273 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 5548960 7531541 ~ 7540586 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G155457 NA non-coding CI01000029 null 7418805 ~ 7419035 (+)
tiger barb (Puntius tetrazona) G119435 NA non-coding NC_056715.1 CM032084.1 9520135 ~ 9540489 (+)
mexican tetra (Astyanax mexicanus) G130518 pip4k2c,LOC107598997,LOC107664235,LOC107593957,LOC107714989 unknown NC_035911.1 CM008314.1 9117170 ~ 9119782 (+)