Gene
RNA
| Item | Value |
|---|---|
| gene id | G13735 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 2102157 ~ 2103468 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU15345 | True | 1312 | lncRNA | 0.42 | 1 | 2102157 | 2103468 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_02090800_02101722 | CSAD | coding | upstream | 291 | 2090687 ~ 2101866 (+) |
| CI01000001_02084996_02088477 | NA | coding | upstream | 12825 | 2084996 ~ 2089332 (+) |
| CI01000001_02009224_02019961 | SPRYD3 | coding | upstream | 81966 | 2007094 ~ 2020191 (+) |
| CI01000001_01955349_01972242 | ZBTB39 | coding | upstream | 129147 | 1955349 ~ 1973010 (+) |
| CI01000001_01918301_01923330 | NA | coding | upstream | 178778 | 1918003 ~ 1923379 (+) |
| CI01000001_02106280_02114656 | ZNF740B, ZNF740 | coding | downstream | 2511 | 2105979 ~ 2115251 (+) |
| CI01000001_02152125_02157921 | NFE2 | coding | downstream | 48553 | 2151932 ~ 2158623 (+) |
| CI01000001_02166796_02171151 | CBX5 | coding | downstream | 63328 | 2166796 ~ 2172179 (+) |
| CI01000001_02393859_02406849 | CALCOCO1A | coding | downstream | 290391 | 2393859 ~ 2407235 (+) |
| CI01000001_02492831_02495337 | NA | coding | downstream | 388963 | 2492431 ~ 2495411 (+) |
| G13722 | NA | non-coding | upstream | 25608 | 2071154 ~ 2076549 (+) |
| G13796 | NA | non-coding | upstream | 96994 | 2004161 ~ 2005163 (+) |
| G13726 | NA | non-coding | upstream | 118545 | 1981627 ~ 1983612 (+) |
| G13791 | NA | non-coding | upstream | 126959 | 1974963 ~ 1975198 (+) |
| G13789 | NA | non-coding | upstream | 162838 | 1939110 ~ 1939319 (+) |
| G13812 | NA | non-coding | downstream | 40189 | 2143657 ~ 2143868 (+) |
| G13813 | NA | non-coding | downstream | 43733 | 2147201 ~ 2147756 (+) |
| G13815 | NA | non-coding | downstream | 46410 | 2149878 ~ 2150195 (+) |
| G13822 | NA | non-coding | downstream | 80950 | 2184418 ~ 2196173 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 431153 | 1667762 ~ 1671167 (+) |
| G13051 | NA | other | upstream | 1057005 | 1043713 ~ 1045152 (+) |
| CI01000001_00483853_00488761 | VWA1 | other | upstream | 1610100 | 483853 ~ 488825 (+) |
| G12614 | NA | other | upstream | 1791216 | 309144 ~ 310941 (+) |
| CI01000001_03618075_03620436 | NA | other | downstream | 1512780 | 3618075 ~ 3621451 (+) |
| G15794 | NA | other | downstream | 2957750 | 5061218 ~ 5064704 (+) |
| CI01000001_05279884_05287123 | NA | other | downstream | 3183281 | 5279837 ~ 5287698 (+) |
| G15995 | NA | other | downstream | 3608417 | 5711885 ~ 5714951 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 5429104 | 7531541 ~ 7540586 (+) |
