G15729


Basic Information

Item Value
gene id G15729
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 4792475 ~ 4794669 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17573
CCTTGATAAAATATAGTTTTATATTTCAGCAAAATATGCTTACAAATACAGAATACTGCATTTACATTGTTTTACTTTTTTTTTTTTCATGTGACATTTGTCTCTAAAATAAGAATGCAATATGGATTAATTCAGTTTTCATCCACAACTCAGGATGGTATGACATTGCAATAATTCACAGCTCATCTATTGTATTTCCTAGTCTTGTGTGAGATAAGTTTCATAAGGAATGACGCAAGCGTAATAAATATGCAGTTTCTTCATCGCTACTCTAATGCAAGTTATTGTCAGCTGTGATGATCATGATCATAATCCATTTATGCAGAACAGTCTATTGTAGAACATTAACACATTAAATATCAAATTAGACAGCATTAAATGGAACAGAACATAATATATATGTGAGACGGCATTTTTATAAAGTTGCATCAGCCAGAACAAGAAAACATGAAGGGAAAGAAACCAGAGAAAACATACAATATGTATAAGGAAAGCAATTATCATATAAGCATTTTCAATCTAACCTCTAAATCAAATATAAATCAATAAATATAAAAGTATTCTGAAATATTGTCTCATATATATATATATATATATATTTATTTATTTATATTTATTATACACAGTGGTATCTAATCTATGTATAAAATAAGATTATAATCACAAAAAATCTTTGTGAACATATTTATGATTTTATGTACAGGAAAAAATACAATTTCCTTGAGTCCCTTGCAGAGAAGAGAGTTGTATAATAATTCAAGTTTCTTTGCTAATCTGCCATGATCTTCCCTAGCAGTACACCTGCAATAACAGCAGAAATGTATTGCATGTTTTAATGCACATTAAAATAAGACCCATTAAAGCACAGCTAAGCCTTCCTAGGAACTGTTTTTCCTTCAATTCTTTAAAGTAACTAAACAGAAACATTTATTTTACTCCTCAAAGCAGTGACACCTGGGGAATTGGAGATTTGCAGCATGATTAATGAGATACTCGTGTGACCCACAGTTAAACTTAAGAATATGCTTCAGTTTTTGATTTATGGTACACTTACAGGCTAAATATTCAAGCTGGATGACTTAAATTGAAATAGGTTTTGGTCAAATCATTCCCAGTTTGATGTAACGTTCAGGATCTTGTCTCTACAAAATAAAGCTTATCACCATAATACATTCATTTCATTGTGCAACTTCTTGGTCCAAACAAATGACCCACCGAAAGAAGGTCCCTAATAACTAAATCAATCAAAGACAAAAGGAAACTAGCAGTTTGTTTCAAAGGCTGAAACATAAAACTTCGTTTCAAGATCAGAAACTATTCTCAACATCACACAGCTAAGACAAAAAATGCTTTAAGGGATCAGCCAGCTACAAGACGCACAATAATGTTTAACAAAGCACTAATGACAGTAACTTCCTTCCAACTAGAACAAACTCCAATTCTGCAGCAACAAAAAACAGTAATCTCTATCAATAGCTCACACCCTCTGGAAGAAACAGATGTCTGAGATGAGGTATTTTAAAATAACATGCTATTAATAATTTAATAAACACTGTCAATTCCCAGACTCTATCTTTTGGTCATAACCTGATTAAATGGACGATGTACTGCAGGTTTCTGATTTGGTCACAGTAATGATGATATTAAAGCAACTGCAACTATAAACCAGCACAGTGCTGTGCTGTTTATAGTGCTACAGCATAAAATAGAAATGAATGAACACATGGACCTCAACAAAATACTCAGTAACACTCTTCATACTGCAGCTCCTAGTGATCTATAACAGATCGATTAAGTATCTCCTACAGCTTTTCCTTTATTTTCTTCAGCCAAACAGATTTCTGAAGAGCCATAGTGAAGAAACCAGCGACTGTCTTCTTAGAGTCAGTGATTTCTCTATGACCCCTCCCACCCCTCATACATAAAACGCAGCAGATCCATAAGCTCCATATCCTGATGGTGTTGCTCTGCTCCCATCCCCCGTGCTCTCAGATGTGGATGTTGTGGTAACGGCCCTTCGCTAGATCTATGTCCACTCTGCGAGCTTCTGCGAAGCTTAAAAACGTGGCTAGCCCCAGCAGATTCACCACAGTGATGAGGCCGAAAACTGACGCCCAGGAACCAGTGGCCTCAATCAGATACCCTGAGAAATACACCATGATGACCCCTAACA
>TU17574
CCTTGATAAAATATAGTTTTATATTTCAGCAAAATATGCTTACAAATACAGAATACTGCATTTACATTGTTTTACTTTTTTTTTTTTCATGTGACATTTGTCTCTAAAATAAGAATGCAATATGGATTAATTCAGTTTTCATCCACAACTCAGGATGGTATGACATTGCAATAATTCACAGCTCATCTATTGTATTTCCTAGTCTTGTGTGAGATAAGTTTCATAAGGAATGACGCAAGCGTAATAAATATGCAGTTTCTTCATCGCTACTCTAATGCAAGTTATTGTCAGCTGTGATGATCATGATCATAATCCATTTATGCAGAACAGTCTATTGTAGAACATTAACACATTAAATATCAAATTAGACAGCATTAAATGGAACAGAACATAATATATATGTGAGACGGCATTTTTATAAAGTTGCATCAGCCAGAACAAGAAAACATGAAGGGAAAGAAACCAGAGAAAACATACAATATGTATAAGGAAAGCAATTATCATATAAGCATTTTCAATCTAACCTCTAAATCAAATATAAATCAATAAATATAAAAGTATTCTGAAATATTGTCTCATATATATATATATATATATTTATTTATTTATATTTATTATACACAGTGGTATCTAATCTATGTATAAAATAAGATTATAATCACAAAAAATCTTTGTGAACATATTTATGATTTTATGTACAGGAAAAAATACAATTTCCTTGAGTCCCTTGCAGAGAAGAGAGTTGTATAATAATTCAAGTTTCTTTGCTAATCTGCCATGATCTTCCCTAGCAGTACACCTGCAATAACAGCAGAAATGTATTGCATGTTTTAATGCACATTAAAATAAGACCCATTAAAGCACAGCTAAGCCTTCCTAGGAACTGTTTTTCCTTCAATTCTTTAAAGTAACTAAACAGAAACATTTATTTTACTCCTCAAAGCAGTGACACCTGGGGAATTGGAGATTTGCAGCATGATTAATGAGATACTCGTGTGACCCACAGTTAAACTTAAGAATATGCTTCAGTTTTTGATTTATGGTACACTTACAGGCTAAATATTCAAGCTGGATGACTTAAATTGAAATAGGTTTTGGTCAAATCATTCCCAGTTTGATGTAACGTTCAGGATCTTGTCTCTACAAAATAAAGCTTATCACCATAATACATTCATTTCATTGTGCAACTTCTTGGTCCAAACAAATGACCCACCGAAAGAAGGTCCCTAATAACTAAATCAATCAAAGACAAAAGGAAACTAGCAGTTTGTTTCAAAGGCTGAAACATAAAACTTCGTTTCAAGATCAGAAACTATTCTCAACATCACACAGCTAAGACAAAAAATGCTTTAAGGGATCAGCCAGCTACAAGACGCACAATAATGTTTAACAAAGCACTAATGACAGTAACTTCCTTCCAACTAGAACAAACTCCAATTCTGCAGCAACAAAAAACAGTAATCTCTATCAATAGCTCACACCCTCTGGAAGAAACAGATGTCTGAGATGAGGTATTTTAAAATAACATGCTATTAATAATTTAATAAACACTGTCAATTCCCAGACTCTATCTTTTGGTCATAACCTGATTAAATGGACGATGTACTGCAGGTTTCTGATTTGGTCACAGTAATGATGATATTAAAGCAACTGCAACTATAAACCAGCACAGTGCTGTGCTGTTTATAGTGCTACAGCATAAAATAGAAATGAATGAACACATGGACCTCAACAAAATACTCAGTAACACTCTTCATACTGCAGCTCCTAGTGATCTATAACAGATCGATTAAGTATCTCCTACAGCTTTTCCTTTATTTTCTTCAGCCAAACAGATTTCTGAAGAGCCATAGTGAAGAAACCAGCGACTGTCTTCTTAGAGTCAGTGATTTCTCTATGACCCCTCCCACCCCTCATACATAAAACGCAGCAGATCCATAAGCTCCATATCCTGATGGTGTTGCTCTGCTCCCATCCCCCGTGCTCTCAGATGTGGATGTTGTGGTAACGGCCCTTCGCTAGATCTATGTCCACTCTGCGAGCTTCTGCGAAGCTTAAAAACGTGGCTAGCCCCAGCAGATTCACCACAGTGATGAGGCCGAAAACTGACGCCCAGGAACCAGTGGCCTCAATCAGATACCCTGAGAAATACACCATGATGACCCCTAACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU17573 False 2173 lncRNA 0.35 2 4792475 4794669
TU17574 True 2171 lncRNA 0.35 2 4792475 4794669

Neighbor

gene id symbol gene type direction distance location
CI01000001_04757377_04759421 DNAJC5, DNAJC5.L, DNAJC5AB, DNAJC5AA coding downstream 32968 4756419 ~ 4759507 (-)
CI01000001_04746153_04754209 NA coding downstream 38266 4746133 ~ 4754209 (-)
CI01000001_04732844_04744038 NA coding downstream 48437 4732844 ~ 4744038 (-)
CI01000001_04726550_04727511 PDPFB, PPDPFB, PPDPF coding downstream 64265 4725927 ~ 4728210 (-)
CI01000001_04468566_04523431 DNMT3BB.1 coding downstream 269044 4468209 ~ 4523431 (-)
CI01000001_04846242_04846925 BHLHE23 coding upstream 51138 4845807 ~ 4847700 (-)
CI01000001_04944573_04950116 TFIP11 coding upstream 149816 4944485 ~ 4950116 (-)
CI01000001_05001068_05003302 NA coding upstream 205872 5000541 ~ 5003417 (-)
CI01000001_05003724_05017009 PM20D1.2, PM20D1 coding upstream 208986 5003655 ~ 5017009 (-)
CI01000001_05017930_05027838 NA coding upstream 222851 5017520 ~ 5027838 (-)
G15646 NA non-coding downstream 88530 4701556 ~ 4703945 (-)
G15704 NA non-coding downstream 158782 4632369 ~ 4633693 (-)
G15703 NA non-coding downstream 160804 4630766 ~ 4631671 (-)
G15638 NA non-coding downstream 224466 4567744 ~ 4568009 (-)
CI01000001_04465168_04466295 CDC42.L, CDC42L2, CDC42P6, CDC42 non-coding downstream 325557 4463257 ~ 4466918 (-)
G16367 NA non-coding upstream 119499 4914168 ~ 4925699 (-)
G16371 NA non-coding upstream 132016 4926685 ~ 4926948 (-)
G16373 NA non-coding upstream 137089 4931758 ~ 4931973 (-)
G16375 NA non-coding upstream 164652 4959321 ~ 4960791 (-)
G16376 NA non-coding upstream 167798 4962467 ~ 4964363 (-)
CI01000001_04395469_04399381 FKBP1B.L, FKBP1B, FKBP1AA, FKBP1AB, FKBP1A, FKB1B, FKB1A other downstream 392960 4392314 ~ 4399804 (-)
CI01000001_02258523_02262621 NA other downstream 2495263 2258442 ~ 2263103 (-)
G14228 NA other downstream 2735997 2055974 ~ 2056478 (-)
G15736 NA other upstream 6232 4800901 ~ 4801395 (-)
G16332 NA other upstream 156020 4950689 ~ 4957842 (-)
G16462 NA other upstream 428108 5222777 ~ 5229585 (-)
G16664 NA other upstream 1549435 6344104 ~ 6347955 (-)
G16753 NA other upstream 1789811 6583054 ~ 6615589 (-)

Expression


Co-expression Network