G158417 (masp2,LOC107571531,LOC107708846)


Basic Information

Item Value
gene id G158417
gene name masp2,LOC107571531,LOC107708846
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 16530052 ~ 16531096 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU234622
ATGAGAGAGACAGTGGAGAGACAGTCATGCTGTAAATCCATTGTTTCCATCACCTTCGGCAGAAAAAAATGCCTGGAAGCCTGTGAATCGGTCCTCATTGGAGTAATCTGATCTGAAGAGCACGGACATGGTGTTGGCGGCTGAATAGATGACGGTGTTTTTGGGCGCATCACCGTAATTTTTCTCTGCCTCACCACAGAACCGTACTGTGTCATTTCCTTCTGAGAACACCTGACGTAGTCATATTCGCAGCGATGAGAAGGCTCCAGGCTAAAATATGTAAAGTAGAGGCGTAATCTGTGTCCCTCTGGTCCTGTGATATTCCACACCATACGCTGGTTGTTAGGATAGGCATTCGGGAAGTTTGGTGAGGTGAAGCTTCCAAATAGTCCTGTCAGCTCTGAGCCAAATGCTAATGGAAGCAGGGTGACGAATGCCAAAGATACTctaaaacagcagcaaaacaaaaaggtgATAACGTATTGAAGCTTTCACAATCCCAACACATTAAACCGAAACAACTGTTCCCACCCTACATTGAA

Function

symbol description
masp2 Predicted to enable serine-type endopeptidase activity. Predicted to act upstream of or within complement activation, lectin pathway and proteolysis. Predicted to be active in extracellular space. Is expressed in liver. Orthologous to human MASP2 (MBL associated serine protease 2).

NR:

description
PREDICTED: mannan-binding lectin serine protease 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU234622 True 542 lncRNA 0.46 2 16530052 16531096

Neighbor

gene id symbol gene type direction distance location
ribc1 LOC107681983,LOC107708847,LOC107570642,LOC107695788,LOC107586532,LOC107716094 coding downstream 24249 16488226 ~ 16505803 (-)
tmem107l tmem107l,tmem107,LOC107571795,LOC107695749,LOC108433473,LOC107708779 coding downstream 128347 16399805 ~ 16401705 (-)
c1ql4a LOC107716093,LOC107708794,LOC107681949,LOC107571784,LOC107695791,LOC107586535 coding downstream 153244 16359689 ~ 16376808 (-)
neurod4 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding downstream 185365 16341446 ~ 16344687 (-)
znf385a LOC107695795,LOC107716219,LOC107586538,LOC107570601,LOC107708851,LOC107681944 coding downstream 198380 16259075 ~ 16331672 (-)
LOC122328366 LOC107708845,LOC107682000,LOC107570669,LOC107716098,LOC107695785,LOC107586560,LOC107586530 coding upstream 10418 16541514 ~ 16545688 (-)
LOC122328572 acvr1ba,LOC107708859,LOC107570552,LOC107681940,LOC107716207,LOC107563637,LOC107695803 coding upstream 78382 16609478 ~ 16616339 (-)
LOC122329052 LOC107716220,LOC107695793,LOC107586565,LOC107683357,LOC107571777,LOC107708795 coding upstream 143141 16674237 ~ 16677367 (-)
LOC122329053 neurog1,LOC107598364,LOC107741101,LOC107664747,LOC107710304,LOC107662038,LOC107563607 coding upstream 149210 16680306 ~ 16681688 (-)
plxna2 plxna2,LOC107594012,LOC108425528 coding upstream 300989 16832085 ~ 17007286 (-)
G158404 NA non-coding downstream 29202 16498369 ~ 16500850 (-)
G158388 NA non-coding downstream 86015 16443806 ~ 16444037 (-)
G158353 NA non-coding downstream 90772 16416925 ~ 16439280 (-)
G158383 NA non-coding downstream 96423 16432961 ~ 16433629 (-)
G158377 NA non-coding downstream 105690 16423964 ~ 16424362 (-)
G158432 NA non-coding upstream 21947 16553043 ~ 16553395 (-)
G158462 NA non-coding upstream 76365 16607461 ~ 16607960 (-)
G158481 NA non-coding upstream 192835 16723931 ~ 16724403 (-)
G158483 NA non-coding upstream 196342 16727438 ~ 16727715 (-)
G158484 NA non-coding upstream 197005 16728101 ~ 16728343 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 171347 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 286657 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 360218 16143833 ~ 16169834 (-)
G158231 NA other downstream 521137 16008106 ~ 16008915 (-)
LOC122329227 NA other downstream 812802 15621942 ~ 15717250 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other upstream 645529 17176625 ~ 17184385 (-)
G158609 NA other upstream 808171 17339267 ~ 17343385 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 882607 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 1514830 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 1700547 18231643 ~ 18235536 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021754 masp2 coding NC_007134.7 CM002907.2 28770225 ~ 28796157 (+)