ttc34 (ttc34,LOC107671969,LOC107737580,LOC107565827)


Basic Information

Item Value
gene id ttc34
gene name ttc34,LOC107671969,LOC107737580,LOC107565827
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12221793 ~ 12228327 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224226.1
CATGCTGAGGGAAGCGAATGTTCGCCTAGTTTTTGGAATTTGGATGTAACAAAGTCTCTCGACAGGTGACTGAATGAAGACCATGGCcactttattatttactttattctttttttcttacgAGTTTTGAATGAAGACAGACGCGCTGTGTATCTTAGACATAATAATTAGCATATTTACGAGAGAACAAGTACGTGGCCACAGTAACTTTGCTAATATTACCTTTTAACGACTTAAACGTTGCCTTAAGTATTAATgttaaagtgttttctttttatgtttcgTCTTCCTATCGTCTTTCACTTATGGGGTCGGCATATTGAGTTTCGGCTGGAGGCTCTTTTTTGGGGGACTAAGTTTTTCTCTAACAGATAGCCGCGTCTTTTGACAGCTGTAAAAAGTAGCAACATTGATCCGTGGTCCATCTAAATGCGGAATATGCGGTACATCTCACAACAGAATGTTTAACTCGTTTAAGACAGAAGTCGACCGAAAGTGCGTGGACTGCACCCTCAAACACACAGGTCATCGAAGACCCTCGTGAAGGCAATGTTATCCAAATCTAAATAGAATTACACAGAAGGGAGATGAATGGCAAACATAAAGGAGCAGCTGAACTGTGCAGAGAGGGCGACAAAATATTGCTCTCTGGGGACGCTGGCAGAGCTGCAGCTCTGTACACGCATGCTTTTGGAAATAATGCGGGTTCCACTGTAGGACACATGCGTGGGCTTAACGCAGGACATTTAGAGGAGGTGATCTCAATGCTGGAGGCCTGGCTTGACGGAGTTTCACACAATTCTATTGAGGGCCTGAGTAAAGGACTTGttgctgtgtttctgtctaCATTATGCCCCAAtaatgtgtctgcttctctttatAAAATGGAGACTTTCCTTCAAGGTACAGGTCATGCCTCAGATGAGATCTTTGCACGGTGTTCTGCTCTTCTAGAGGGAAAACAAATGCCTCAACCTGAGGGTCGCACAAGATTAATTCTGGAGCTAACTAGAGCTCTGGCCTGCTTACTCTCCGACTCGCAAAATCCTAAGGTTCCTCAGCTTTATCTGCAGGCCTTTCGTGGGAATAAATCAGAAACTATTAGACTAGTTAAAGAAAGGCAATTTCAGTATGTGAAGCTATTAGTTAAAACTTTTTACCAGCATATATCTCCAAGATATTCCATTCTCCATACTAAGGGGCAGAGTTCTACACAAGCAAGTGAAGACATCGATGTTCCTAAAGCTGTTGAGTTTTTACTTGCCATTTCACCAGATGACATCCAAGTACGAGAGCTGCAAGCAGCAGTTTTGTTTTCATCCGGAAAGTTCACAGAAAGCACAGAAGCTTTGTCGCTGGCTCTTAAAGTAGGTGAATCACAGACTGAACGCGCAATGGCGCCAGAGAAAAGAGCTTGTTTACTTGTGGGCAGAGCAGCTGCTTATTTTTCCGCAGGAGGGCGAGCAAGAGAAGTCTGCAAAGATCTAGGTGACGGCTttgcgcttcatccagccacaGCAAGACAGCAATTCCAGAGTCTTTTCTCGGACACCGGAGTAGGATTAGCTGCTCGCATCCAGCTGCGTCAACAGGCCGAGAAGGGTGTCTCGGAGTTCAGAGAGGCCGTTCTTATGAGGCCTGACCTCAGGTCTTCAAAAGGAGTGGAGCTGTTGGATCCCGTTATCGCTCAGCTGCGAGCTCTATGCCACCTGGAGTCGGACGGAGGAGGCAGGGAACTGCGGGTGCGTCTGGCAGACTGCCTCCTCCTGCGTGGAGAACATAGAGAAGCTCTTTCCATAAGTAGCCAGCTCGCCGCTGCAGCTCCATCCCAGCAGAGCTACCAGAACACCGTGCAAGTGCTCAGAGGGTATTCCCGACTCTTCACCGAAGACCATAAAGGTGCTCTGGAGGATTTCCAAGCGGTGATTGAGCATAGTACTCCTCACCCACCCAGCTGTGTCCGTGCTCTCTGTGGAAGGGGTATCCTGCGTATGATGACCGGCTCACACTACCTTACTGCTCTAGATTACAGCACAGCAAGCCAATTACAGCTTCAGGATGCTTCTGTAACTGTTAGGTGCCTGGTGCCTTGGAATTACCGTGGGTTGCTGTGCACCGTGTTGCTGGAACAGGGAAGAGTCATGCTTGAGGGGACCGAAGAGCAAAGAGCTGAGACAAATCCTAGTGTTCAACAAGAGCATGAGGAGGGTCACACCAACATCAAACAGAGGTCTGCTGTTGGTGTGCACACGCTTGCTCTTCTTCTAATGGAGTTACAACCCAGGGCCGATGGACCCCAGATTCTCACAGCAGATGCTCTATACCAGTTGGGTCGTGTTGAAGAGGCTTATCGTCTTCTTCTGAACATTGAGCACACAGCCCCACGGCCACCGATTCTTGCACGCCTTGCAATACTGCAACTGCATCGAGGCTTCCTCTATGATGCCTATCAGCTACTGAAGAAGCTGATCAATTCAGGAGACACTAGCTGTCTGAGGCCCCTTTTATCTGTAACATCTTTACAAGACCGAGCCCTTCTAGAAAAACACTGTCACACTGCTTCCAAACGTATACTTTGTGGCCAACAAGCAGAAAGTGCAATAAGGGAAGCTGTGGCCTATTTGTCCATTGCCATTATGGCTTCAGGTGGTGGTGCAATAGATTCCCTGCTGGAGAGAGCGAGATGTTATGCTTTGCTGGGCCAATGGAAAACAGCTATCTTTGACTTCACCGCAATCCTTAAAGAGCGCCCAGACCATGTGCAGGCTTTGTGTGGAAGAGGATTCACTTTTCTTATGCTGAACCAGCAGAAGGAATGCACACTGGACATACTGGTTGCCCTTCAGTGCGGAGCTGAGGAGGTCACTCAGAGCATGCTGTCGCTTAAAGACAAAGCGCGGAAGCTCGTCAGTGAATGGTTGGGTCAGCACTGTCGTAGCAGCCTGTCAGAGACTCTGTCGGCCAACCCTGTACCCTGCCGTGAGGAGCTCCTTCGAGAGGCCTTTCTGATTGGTGGAGCGCTGATGAACACTGACTGCAGGGAACCCAGGTGGCACCTGCTATACATAGATACACTACTTGCCAAAGGGGAGGTGAATGCTGCAGGTGCGCACCTGAAGCAGGTGTTCGGTCAAGAGCCTCGAGACGCCGCAGCTAAGGCCAGGTGGGGTGTTGTGAAGGCCTGGCAGCAGAACTACAAAGTGGCAGCCAACTATCTGAGTGTGGTGTCTGAGAAAGAACCAGCAACTCTAGACTTTCTAATCACTCTTCTACAGTCGGCTCAAAGGAAACACCTAGCACAGGCAGCCTCTCAGCAGGCCAGCAGCGTTTCTGAAACTGGTCAGTGGGAGCAAGCTTTAGCCCTCCTTACACTAGCTGTGCGAGCGGTCAGTGAGATGAAGCTTCAGTACCTCCGGCAGCGTGCAGCCTGTCTGGCCCACCTGGGGCTCCATGAGAGGGCGGTGTCTGATCTGAATAAGGTCATCCAGGGCCACAGCGCAGACGGCAGAGAGGAGCAAAGGGTCTGGGCGGAGGACCACTGCCGCAGAGGCCGTAGCCTGTTGCTGTGTTCCCATGAAGAGTCTGGGTTACAGGACTACTTTCAAGCCTTGGAGCTGCACGAGGAACAGGCTCTGCTGTGCGTGGAGACTGGTCTGGGAACCCAATGCCTTGCTGAATTGTTTCTGCGCTTTGCCCTGCAGAACTATGGGCAACAGAAACTCGACAAAGCTTGGCTTCTGACAGAGACCGGGCTTAGAGTGGACAGCGGCCATACAGAATTGCGCAGACTGAAGGCTAGAATAAAACGAGAAGTCTCTGGTCCATGTACTGTACACTAGAGATGAAACATACACAAGATTAAATGATGGCAAAAAg

Function

symbol description
ttc34 Orthologous to human TTC34 (tetratricopeptide repeat domain 34).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K24947 TTC34; tetratricopeptide repeat protein 34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224226.1 True 3876 mRNA 0.49 8 12221793 12228327

Neighbor

gene id symbol gene type direction distance location
si:ch211-112c15.8 NA coding upstream 857 12213370 ~ 12220936 (+)
ccdc30 ccdc30,LOC107737582,LOC107672059,LOC107699607,LOC107712696,LOC107565824 coding upstream 17674 12188494 ~ 12204119 (+)
usp21 usp21,LOC107737585,LOC107565835,LOC107593392,LOC107699606 coding upstream 34668 12183097 ~ 12187125 (+)
arhgef3l arhgef3l,LOC107699573,LOC107712679,LOC107593396,LOC107565836,LOC107737584 coding upstream 39145 12175329 ~ 12182648 (+)
uba1 uba1,LOC107737583,LOC107672015,LOC107565837,LOC107593395,LOC107699604 coding upstream 47407 12157497 ~ 12174386 (+)
zgc:154075 zgc:154075,LOC107712677,LOC107699610,LOC107593441,LOC108434639 coding downstream 1641 12229968 ~ 12235977 (+)
pax7b pax7b,LOC107672046,LOC107593389,LOC107687391,LOC107565832 coding downstream 24398 12252725 ~ 12311254 (+)
kcnab2b kcnab2b,LOC107687393,LOC105894315,LOC107712982,LOC107672035,LOC107737578,LOC108434650,LOC108276490 coding downstream 104279 12332606 ~ 12384111 (+)
emc1 emc1,LOC107593385,LOC107591116 coding downstream 212729 12441056 ~ 12449532 (+)
ubr4 ubr4,LOC107687395 coding downstream 221943 12450270 ~ 12490854 (+)
G156931 NA non-coding upstream 16398 12204256 ~ 12205395 (+)
G156933 NA non-coding upstream 46878 12174530 ~ 12174915 (+)
LOC122328486 NA non-coding upstream 183905 12030146 ~ 12037888 (+)
G156881 LOC107737595,LOC107671985,LOC107568839 non-coding upstream 248871 11946684 ~ 11972922 (+)
G156843 tktb,LOC108410447,LOC107671986,LOC103046877,LOC107737598 non-coding upstream 295418 11827741 ~ 11926375 (+)
G157079 NA non-coding downstream 11522 12239849 ~ 12241401 (+)
G157081 NA non-coding downstream 17547 12245874 ~ 12246101 (+)
G157084 NA non-coding downstream 124763 12353090 ~ 12386381 (+)
G157265 NA non-coding downstream 500717 12729044 ~ 12787715 (+)
G157294 NA non-coding downstream 624914 12853241 ~ 12853832 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 475223 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 489432 11730980 ~ 11732361 (+)
G156586 NA other upstream 1044760 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1136189 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 1297805 10913904 ~ 10923988 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 17866 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1865751 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2071374 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2375466 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2381202 14609529 ~ 15153978 (+)

Expression


Co-expression Network