hoxc11a (hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846)


Basic Information

Item Value
gene id hoxc11a
gene name hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18379954 ~ 18382930 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224261.1
CTTAGACGGATTGCGCGTCATCTCGCCTTCCCAAATTTTCTCCTTCTGCAGCTCGAATCCAAAACATCATATCTGTAGTACGGACTACAGGAGAAAGATGTTTAACTCTGTTAATCTGGGCAACTTCTGCTCCCAGACGCGTAAAGACCGGACGTCCGAGTTCGGGGACAGGACTGGCTGTGCCTCCAACATCTACCTCCCCAGCTGCACCTACTACGTTCCCGAATTTTCCGCCGTCTCTTCGTTCCTTCCGCAGGGGCCCTCGCGACAAATCACATACCCTTATTCCACAAATCTATCTCAAGTGCAACCGGTGCGAGATGTTTCCTACGGTCTGGACCCCTCCAGCAAGTGGCACCACAGAACCAACTATGCATCGTGCTACTCAGGAGAAGATCTGGTGCACAGAGACTGTCTTCCGCCATCCACCATGACAGAAATGCTCATGAAAAACGAGAGCGTGTACagccaccaccaccaccaccaccagcatCACCCGAACTCTAGCCACCCGTCCACTGGTTTCTACACCGGCGTAGGGAAAAACAACGTGCTCCCTCAAGGCTTTGACCGCTTTTTTGAAACCGCCTATTGTAGCACGGACAATCAGTCAGAACATTGTTTACAAAAGAGCGAGATGAACAAATTAGAGACTCCGTCCCAGCAACCCACAGCTGTTTCCGCAGCGCAGGAGCCGGAAAAGGACGCGGAGGATGAGGAGGAACACACAAATTCGGGCTCGTGCACTTCAGCAGCTGCTAAGGACGGCAACGCAGGCAAGAGCAGCCATTCGAGTACCCCGCGCACAAGAAAGAAGAGATGTCCCTACTCCAAGTTTCAGATTCGTGAACTGGAACGAGAGTTTTTCTTTAACGTTTACATCAACAAGGAGAAAAGGCTGCAGCTGTCCAGAATGCTAAACCTCACTGACAGACAAGTCAAGATATGGTTTCAGAATCgcagaatgaaagaaaagaaattgaGCAGAGATCGCCTGCAGTATTTCTCTGGGAACCCGCTCTTGTAATCGTCGAAATGGcgttgctttttatttaatattctgcaGACGAAAATTACGTATGTCTAAAAAATGCCCACCGAGCTAAATAAATCGTCGGAAATGTGTTTGTTACGGCCAGAAACAGTATTAAACACTGTTagtcgtgtttttttttgggggggggtaaCAGTATTGTAATGGCTGAGGGTGGGGAGAGAATGCAAATTTGCTTATTTGTCAAATTAAACCGGCATTTCTAGTTTGTGATTCACAAACTAAAACGTACACCtcacaagtttatttttattttatttttttttatgtacgtGACGCATCTTTTTGAGTGAAACGTTTAAAATCTTCACTTTGAAAATAGTCACAAAATAGCctactataatatattataaaattgtacCATCTATCCTTTTATGgttgtatatatgtacattaaaGCTCACACACTCGACTCTGGTTCGAATCTGGAGATGTcatgctcttctttttttttatgtgttcacCATTTAGAACTGTGACTTGTACAATCTGTAATATTGTATTCCTTGTACAGAGATTATGCATTGTGCATTcgtgaatgtaaatataatgttattttgagTACCCTCGCCCTATCCCTGCTgctatttttctttacattgcGTTTGCAGCCTTGTGAGCTTTGTCGTTTAAATTATTTGCTGTACCCCCAAAGTTCTCGTTCATTTCGGAGGGCTAACCCGGCGACCCCGTTTGGCCTGTGTACTgcatattaatcaaaaataa

Function

symbol description
hoxc11a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in neural tube; tail bud; and ventral mesenchyme. Orthologous to human HOXC11 (homeobox C11).

NR:

description
homeobox protein Hox-C11a-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09296 HOX_11; homeobox protein HoxC/D11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224261.1 True 1780 mRNA 0.44 2 18379954 18382930

Neighbor

gene id symbol gene type direction distance location
hoxc10a hoxc10a,LOC107593968,LOC107664221,LOC107714961,LOC107706973,LOC107598838,LOC107697934 coding downstream 3791 18356198 ~ 18376163 (-)
hoxc9a hoxc9a,LOC107593969,LOC107714960,LOC107697937,LOC107707007,LOC107598864 coding downstream 13714 18361054 ~ 18366240 (-)
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding downstream 21573 18355661 ~ 18358381 (-)
hoxc5a hoxc5a,LOC107664112,LOC107593967,LOC107664111,LOC107697940,LOC107715000,LOC107706972,LOC107598908 coding downstream 38720 18339049 ~ 18341234 (-)
hoxc4a hoxc4a,hoxc4,LOC107664204,LOC107714997,LOC107598886,LOC108433407,LOC103034018 coding downstream 49253 18316637 ~ 18330701 (-)
hoxc12a hoxc12a,LOC107664239,LOC107593973,LOC107715004,LOC107697936,LOC107707010 coding upstream 9020 18391950 ~ 18393519 (-)
hoxc13a hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009 coding upstream 18067 18400997 ~ 18403756 (-)
rarga rarga,rarg,LOC107715005,LOC107707012,LOC107593976,LOC107697942,LOC107664174 coding upstream 73995 18456925 ~ 18507741 (-)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding upstream 152782 18535712 ~ 18545493 (-)
LOC122328645 tuba1b,tuba1c,LOC108255233,LOC107707017 coding upstream 181132 18564062 ~ 18570774 (-)
G158955 NA non-coding downstream 133127 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 141422 18237897 ~ 18238532 (-)
G158952 NA non-coding downstream 173496 18206143 ~ 18206458 (-)
G158950 NA non-coding downstream 176502 18203036 ~ 18203452 (-)
G158949 NA non-coding downstream 178988 18200767 ~ 18200966 (-)
LOC122328626 NA non-coding upstream 38929 18421859 ~ 18456506 (-)
G158984 NA non-coding upstream 57720 18440650 ~ 18442479 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding upstream 176490 18559420 ~ 18563142 (-)
LOC122329081 NA non-coding upstream 230746 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 259332 18642262 ~ 18644688 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 29607 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 77379 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 144418 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 321215 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 957437 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 364461 18747391 ~ 18754712 (-)

Expression


Co-expression Network