LOC122328567 (LOC107668556,LOC107570149)


Basic Information

Item Value
gene id LOC122328567
gene name LOC107668556,LOC107570149
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15195117 ~ 15197461 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224313.1
tgtaatctaatgtattttttttaggttttctcCTATGAGGTGAAGAGTAATCTAATATAAAAGAATCCAAGatgatataaaaatgtgaagaaaaagaaaatattcaatTTGTTGTTACATGATGTGCATTAACAATACATTACATCATGACTACCCAAAATGAAGTTTGTTAAAGCTGCAGGGGGTTTATtgtaaagcaaataaataatctttaaaatgtcttaaatgaatcattttaaaattacatcaTGTTTACCTTTATGTCATGCGACTACTAACCGATGGCGTATAATCGTGAACATGCAAAAGTAATACTTCATTATTGACttattactttaaaatctatttatattatgtgaaagtttatatatatatattactattcatttattaatcagAATCTTTTACGCTGGACTTGGAGGGTAAGTCTTCCATCTAGTGGTTGTTTAGTTAAATGACAGTATTTGTCCTTAAAATTACAATCTTTCTACTTTTcacccacacacatatatatatatattattaaacactTATTAATCCAAATCTTGTACAAAAGGTACCAGGAATGTACGTGCGTCATCTAGTGGCTTTTTGGTAAATTTATGGTCTTTGACCTTTTACTGTATTGCAAAATAATGTGAATGTAACCTGTTGTAACAATTTCCTTTATACACATAACTGTCCAAACTCACCAAAAAAGGTTAGATACTCTGTATTATAATTCTTATTTGAAGGTTTTTGTATGAAGAGTGTAAAGACTGTTTGTGTTCACGTGTACATACAATATGTCAGTATATTGAGAGACCCTACAATGCCGTTTGAAAACCACAGTTTAGCCATGACTGCTTTACATCCTGTTTCACTGTAAATAGCTCACAACAAGGTGCTTCAACACGTAACATAGCTTTCACTCTCTCATGAACAATATGAAGAGCCTGTATATACTGCTTTTAGCACAGAtaAGTGTGCAGCTTAAGTGCGACAACACAAGGATTCAAGCCACAATTGGAAGCACTTTGACAATTACCTGCACCTATAAAGCAAACCAGTATCGATTCAGCAAAAAGTACTGGTGTGCTGGAGACTCCAGATCCTCATGTGAAGTTCTGATGGACACAGATGGATTCACACACGCTGTGTACAGAACACGGGCTCAAATCATTGATGGAGCTTCTAGAGGCCTGACGGTATATATAAGAGATCTAAAGTTAGATGACAGTGGAACTTACTGGGTTGCGATTGACAAAATTTATACTGATCTTATGATCAGGATCCAGGTCACCGTAACAAAAGAGGCTGTAATAAAACCAAATGTTTGGCCTCTCAGCTCCCCCGAGATGACTTGCTGGGGTCAACCATCTGTGTTTCGCTGTAGGAGTGAGAGAGGAGCGGATGTGCAGTACACTTGGTACAGAGTTGGACACCCAAACAACATTGTTCTGCACCATTCCTCTGATCTCTATCTCCATTGTTCAAACATCACTGAAGACAGTCAGCTTTTCTGCTCAGCCTTTAATGACGTCAGCAGCCAGAGAAGCGAATTTGTTTCTCTGCATCTACTTCAGTCTGCAGAAAAGGACTGTGTTTATCGCATCTCATCGAGCGGTGAGATTTACCTGTACAttaagtttttttctatttgcattCTGGGTTCCTTGCTTCTGACTGGTCAGTCGTGCAATGCAGTGGTCAGTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC107668556

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224313.1 True 1697 mRNA 0.36 3 15195117 15197461

Neighbor

gene id symbol gene type direction distance location
LOC122328908 smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260 coding downstream 102870 15078586 ~ 15092247 (-)
LOC122328916 iqch coding downstream 121235 15049366 ~ 15073882 (-)
LOC122328901 LOC107549209,LOC107689901,LOC107738870,LOC107681562 coding downstream 262111 14905836 ~ 14933006 (-)
LOC122328919 kcnn3,LOC107723559,LOC107657645,LOC107699550,LOC107714686,LOC107595057,LOC108280396 coding downstream 386340 14772091 ~ 14808777 (-)
LOC122329128 LOC107737536,LOC107673093,LOC107716130,LOC107591120,LOC107687434 coding downstream 470892 14717745 ~ 14724225 (-)
LOC122328911 LOC107570149,LOC107668556 coding upstream 119266 15316727 ~ 15324022 (-)
LOC122328900 rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644 coding upstream 141598 15339059 ~ 15347198 (-)
tmem269 LOC107570193,LOC107726151,LOC107695831,LOC107668567,LOC107568457 coding upstream 281579 15479040 ~ 15490268 (-)
si:dkey-205h13.2 LOC107716170 coding upstream 304967 15502428 ~ 15506646 (-)
hspg2 hspg2,LOC107745451,LOC107695829 coding upstream 313494 15510955 ~ 15598026 (-)
LOC122328921 NA non-coding downstream 5479 15188148 ~ 15189638 (-)
G157999 itga8,LOC107689880,LOC107717802,LOC107681583 non-coding downstream 349439 14836361 ~ 14845678 (-)
LOC122328920 NA non-coding downstream 364268 14830264 ~ 14830849 (-)
G157966 mef2d non-coding downstream 465455 14651424 ~ 14729662 (-)
G157928 NA non-coding downstream 751666 14383738 ~ 14443451 (-)
G158014 NA non-coding upstream 4905 15202366 ~ 15203950 (-)
G157984 NA non-coding upstream 12767 15210228 ~ 15338843 (-)
G158019 NA non-coding upstream 98427 15295888 ~ 15296636 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding upstream 279026 15476487 ~ 15477769 (-)
G158174 LOC107571455 non-coding upstream 406387 15603848 ~ 15607080 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 146773 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 605495 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 864333 14326966 ~ 14330784 (-)
zbtb48 LOC107673103,LOC107716144,LOC107591072,LOC107687447,LOC107737528 other downstream 962066 14222809 ~ 14233051 (-)
G157373 LOC107591099,LOC107703059,LOC107737560 other downstream 1912790 13280256 ~ 13282327 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other upstream 149956 15347417 ~ 15474390 (-)
LOC122329227 NA other upstream 424481 15621942 ~ 15717250 (-)
G158231 NA other upstream 810645 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 946372 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 1043349 16240810 ~ 16243395 (-)

Expression


Co-expression Network