si:dkey-205h13.2 (LOC107716170)


Basic Information

Item Value
gene id si:dkey-205h13.2
gene name LOC107716170
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15502428 ~ 15506646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224314.1
ATGAGCTGCAAGgTATTTTCAACATGGGTGGTTCTTGCTACAAgtGCACTCATCTCACTATCCACTCAGAATTGTATAACCAATTGGTTTGACCATGATGACCCAAATGGCAATGGAGACAGCGAGCTGTTGGCTGACCTTCTCAATTCATATCCTCAAGAAATATGTCCAAATCCGATCGCAATAGAGGCTCAGACCGTCTCCGGCCAATCAGCATCTCAAACAGGAAACATCTTTCAAGtATATAATCCAACAACCGGGTTTTCTTGTGTAAACGCAAACCAAGTAGGAGGGTTATGTTTTGATTATAAGGTGCGCTTCACCTGCCCGGAGGACTGGTGTTCAAAATGTAGGACACCCTGGTTTGACCGAGATAATCCCAGTGGACCAGGAGACTATGAGACGTTGTCGTTGACCCTGGTAACATATCCACTGCAAGTCTGCGCTCAGCCCATCGCTATCGAGGTGGCAACTATTAGTGGGACCCCTGCACTGCCTACTGGAAACAATTTCCTAGTATATGATCCAACGCAGGGCTTCGTTTGTGTGAACGCACAACAAAACGGAGGGTGTCAGGACTACAAGGTCCGCTTCACATGTCCAGTGAGTTTTTGCCATCCAAAGTGTGTAACCAGGTGGTTTGATTCTGACAACCCTAATACAAATGGGGGCGATTCCGAACTCCTGACTGTCCTCCTCAGTATGTACCCTAACGAAATATGTCAGAATCCAAACGGAATAGAGGCTCAGACCATCTCTGGCCAGCCAGCGTCTCAAACTGGAAATGTCTTTCAATCATATAATCCAACGACTGGGTTTTCTTGCATAAACGCAAATCAAGGAGGAGGAGTTTGTGCTGATTATAAGGTGCGCTTCACCTGCACAGAGGAATGGTGTTCAAAATGTAGGACAACTTGGTTAGACCGAGATAACGCCAGTGGAGGAGACAATGAAAGGCTGTCATTACTGCTGATAAGATACCCACTACAGGTCTGCGCTCAGCCCATCGCCATTGAGGTCACAACCATTAGCGGGACCCCCGCACTGCCACCTGGAAACATTTTTGTAGTATATGACCCGTTGCAGGGCTTTGCGTGCGAGAATGGAGCTTGTCAAGATTACAGGGTCCGCTTCACCTGTCCATCGAGTTTCTGCAGAACACAGTGTGTAACCAGGTGGTTTGATTCTGACAACCCTAACACAAACGACGGCGATGCTGAACTCCTCAGTGTCCTTCATAGTATGTACCCTGGTCACATCTGTCCGAATCCACTCGGAATAGAGGCTAAGACGGTTATCTCTAACCAGCCTGCGTATCTAACTGGAAATGTCTTTCAAGTATATAATCCAACAACTGGGTTTTCTTGTATAAACTCAAACCAAGGAGGAGTGTCATGTTCTGATTATAAGGTGCGCTTCACTTGTCCAGGGGACTGGTGTTCAAACAACAGGACAGCCTGGTTTAACCAAGATAATCCCAGTGGACCAGGAGACTATGAGACGCTGTCGTTAACCCTGGTAACGTATCCACAACAGGTTTGCACTCTGCCCATCGCTATCGAGGTGGCAACCATTAGTGGCATCTCTGTGCTGCCTGCTGGAAACAATTTTCAAGTATTTGATCCACTGCTGGGATTTAAGTGTGTGAATAATCAGCAGACTGGAGGGGTCTGTCAGGATTACAAGGTCCGCTACACGTGTTAGTGCGAGAGCCGTGTTCTCCCAAACTCCTCATATTGTAGCCATAACTAACTGTATATTTTGTTAAACTAAgctaagaaaaaagaaaaagacataaataattaatagtacAATAAACGTTTGCTTGCATTGCCCCCTGGCCTCAGTTCATGTTGTAATTGTGTTGTGGAATACTTTGTAAAAACACTGGAGTGAATTACATAATTCGATTCAGTACTCTATTGTTATTATGGTCTCTGCACTTGTGCACACATCTTGTTCGTTCCAACAGAATCAGATTTAAGTCCATTTCGCTTTCAGTAACTTCTGGTTAAAATATGTggccaagaaaaaaaacaggttgtGGAAATTAAAAATTGGAGAAAGTTAAACAGATgttattataacataataaaataattcttgaGGTGGCAGTTCTATTATACCTagacaaattattatttttttcatcttatgGGTTTTTTCATCTTAAACTTTCTGTGATGTATAACTTTTCATTGTCGTGTGAAGGCACTGAACTCATGTTcctgtattcttttttttctgtaacctCGTCTTCAGCGAGGCTGAATGCTTGAACAACCTTATCGttatctgttttttattataaagcgctaattacttttatatttctttattttgatgtgcttAAGGAACCATTGGGCTATGCTATATAGAACCACTGAATCATTGGCCTAAGCTAGATTTTATGTGTCAAGCATGAGTTGCAACCATCTTTAACTCTATAGAGATTGTGGTTTGTGGTTTTATATTTTcgaaatgtgaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC107716170, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224314.1 True 2488 mRNA 0.43 15 15502428 15506646

Neighbor

gene id symbol gene type direction distance location
tmem269 LOC107570193,LOC107726151,LOC107695831,LOC107668567,LOC107568457 coding downstream 12160 15479040 ~ 15490268 (-)
LOC122328900 rsbn1,LOC107668555,LOC107570136,LOC107737499,LOC107716162,LOC107564641,LOC107695834,LOC100330644 coding downstream 155230 15339059 ~ 15347198 (-)
LOC122328911 LOC107570149,LOC107668556 coding downstream 178406 15316727 ~ 15324022 (-)
LOC122328567 LOC107668556,LOC107570149 coding downstream 304967 15195117 ~ 15197461 (-)
LOC122328908 smad3b,LOC107686302,LOC107738715,LOC107583760,LOC107672260 coding downstream 410181 15078586 ~ 15092247 (-)
hspg2 hspg2,LOC107745451,LOC107695829 coding upstream 4309 15510955 ~ 15598026 (-)
galnt6 galnt6,LOC107695825,LOC107570209,LOC107668563,LOC107568460 coding upstream 104969 15611615 ~ 15620804 (-)
adcy6b adcy6b,adcy6,LOC107695824,LOC107716189,LOC107745452,LOC107668560,LOC108433131 coding upstream 115835 15622481 ~ 15659407 (-)
dtx3 zgc:66440,LOC107745454,LOC107570277,LOC107695821,LOC107571783,LOC107716192,LOC107668558 coding upstream 212612 15719258 ~ 15724002 (-)
stat6 LOC107570234,LOC107745457,LOC107571782 coding upstream 230955 15737601 ~ 15756066 (-)
G158024 si:ch73-206d17.1,LOC107571682,LOC107726152,LOC107695830 non-coding downstream 24659 15476487 ~ 15477769 (-)
G157984 NA non-coding downstream 163585 15210228 ~ 15338843 (-)
G158019 NA non-coding downstream 205792 15295888 ~ 15296636 (-)
G158014 NA non-coding downstream 298478 15202366 ~ 15203950 (-)
LOC122328921 NA non-coding downstream 312790 15188148 ~ 15189638 (-)
G158174 LOC107571455 non-coding upstream 97202 15603848 ~ 15607080 (-)
G158188 NA non-coding upstream 174240 15680886 ~ 15681872 (-)
G158198 NA non-coding upstream 221508 15728154 ~ 15789331 (-)
G158208 NA non-coding upstream 305635 15812281 ~ 15812927 (-)
G158227 NA non-coding upstream 458107 15964753 ~ 15965763 (-)
magi3a magi3,magi3a,LOC107695739,LOC107564661 other downstream 28038 15347417 ~ 15474390 (-)
LOC122328902 LOC107737500,LOC107673074,LOC107695835,LOC107564653,LOC108275744 other downstream 200746 14684890 ~ 15301682 (-)
LOC122328913 zgc:162898,c4h15orf61,LOC107738714,LOC107686305,LOC107583911,LOC107718314,LOC107596966,LOC107672207 other downstream 454084 15047152 ~ 15048344 (-)
fitm2 LOC107673062,LOC107737511,LOC107568407,LOC107564660,LOC107716178,LOC107668335 other downstream 912806 14570347 ~ 14589622 (-)
G157909 LOC107673054,LOC107737519,LOC107716153,LOC107591065 other downstream 1171644 14326966 ~ 14330784 (-)
LOC122329227 NA other upstream 115296 15621942 ~ 15717250 (-)
G158231 NA other upstream 501460 16008106 ~ 16008915 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other upstream 637187 16143833 ~ 16169834 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other upstream 734164 16240810 ~ 16243395 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other upstream 848723 16355369 ~ 16358705 (-)

Expression


Co-expression Network