hoxc9a (hoxc9a,LOC107593969,LOC107714960,LOC107697937,LOC107707007,LOC107598864)


Basic Information

Item Value
gene id hoxc9a
gene name hoxc9a,LOC107593969,LOC107714960,LOC107697937,LOC107707007,LOC107598864
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18361054 ~ 18366240 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224331.1
attattattattgttattgtttatttcagtgatgCGTTATTCAATTCAAAACGACGTTATATCATGAAACAAATTGAATTTGTATAGGCTGTGCCTCATGTTAACATCAACAATATCAGAACAccataataagaaaaataaataaacgtaatGAAAAACGGTCACGATGGAAACAACTTTGGTATCAAAGAACCACGCCCTCGGAAAAGCAGATATAAAGACTCTTTAGctccttgtttttttccctcttttttttatgtgtgttacAGATGTTCCTGAATAATATGCAACATTAAACGTGCGTTTGTTCAGTATATATGCCACTGCGTAATTATCCCAACAATTTTGATTTAGATGCGTTGATCCCCACAATATGCTACAGTCTGCAACCAAACCTTTCAattatttatacagtaatataagattttgctttcacttttgttgtaaattaaattCACTTTTGAGAATCTAAATCCCATGGCTTCCGCAGTACATTACGATGAGAAATCAGATCCAGGCttcctttaaaacacacactgaattCGCGAAACTGCATAAAATCAGAGATTTAACGCCCTTTGCTTCCTCTCGCTTTTTAGTCGTTTTGctgaatcaaaaacattaattcgCTGTTCAGCAGCTGAAAAGAGAGGCATAATGGCGCTCGTTGCATCGAGCTGCACTCTCTATAAAATCGTTTGACTAATATAGCTTCGCAActgttttaataacatattcGCAAGGCAAACGGAATATTAATAATCCAGATTGCCCTCGTATTGTTATTTGGTGCGTCTATATTTTGGTAATGTCTGGTGTTCCCACAGAAAACAggacggggaaaaaaaaaagcctgaccTCATGTGGCCGATTTCATACTGGGCCTAACACTGACAATGACTGCAGACCAAAATCAACGCATTTCCAATACGTCGCAATACGCTTAGGAGAAAGTTTTAACGTAAAACAATCACGCATTAACTGAAACACGGTCGAGtggtctcattttcataaaaGGGCATGTCCTTAAAGAAGCCTGTTGCATTGATTCgtgtgatttttgttgttgttgttgttgttcgtGTGCGCGCCtgtattaataattgaaaattaaGAAAGCAAACCTTTATATTCACGAATATTTCACACAGTTTTATTTCTAGCTGTGGTGTATAATTGTATTTTCGGCTAACAAGATCGTTTCTCTCGTTTGACAACAATTGGAATTAAGCTGGACAGAATCGCAAAAACGGCAAATtgcataaaaagaaagaaaatggaaagGGAACGGATAGCACAAGGAATTTACTAAACCTCTCTATATTGTTTTATGCacatgcctttttaaaaaaaaataccacacGAAGCCAACAACGCTTTTTCCTAGCTTTATCACggatatatacaattttaagaGCTTTGCGAACAGCCACTCGTCTATTTTCTAGTGTATTCGACAAAGGTTTGATGAGACTCCTTTCACAAGCGTAGTGTTGGTTTTATATTATACCAGGAACTCAACTGCAGTTTTATTAACGACACGTTTATGAACAATCAAATGGTCCTCGTAAAAATTTATTGAAGGACATAAAAGCATGCACGACCACTTGACGAATATAGCCGCAGTTGTGGTGCGTTTTCAGGCGTCTTACTATTCCCACCGCCCCGATTTGTTTAAAACTCCATTTTATGAGGGATATCccaattgcatttatttgaaactcgTGGAAAATAGGACTTCGGTGCGTAAAAGCAACCCTCTAGACAACACGAGAGCCGTATATTTGTCAAAATTATCCCGTTGGGTCCTTTCCAATTACATAGAATTAATAGTGAAACTGAGAAAGAAATATACaacggtttctttttttttctgactgttttaataaataacattgtgCAGTGAGGGATGCGCGCAGGGCTAGCCACGGCACAGTAGCACGCTCCAGACAGAGATTGATTACGCCGACAAATAGTGCCCTTTTTAAGAGCGTTAACGCACGCGCACCGTCGCTCCGCGGGGCTACAAATAATCATTCGGTTAATCGGCCGCGTCGCAATATACTAGAAGCACACCGCGTTCGTATATTTAGGCTCGGCGAAAAAGACAACGTTAGTATTAAGCAACCTACTGCAAGCTCGAAGCGCGTCGCCGTTCCGGGAGAACGCGCGCATTGATCTGCTGTGCAGTTTTTCTGGGGGTAAACGCAATCACGTGTTCCTCAGGCGTCCAATCCCAGCTGGGGAAGCTTTCTGAAATAATTACCTGTCTTGATTGTTCTACGGTCAGATAAAAAAGTACACATACACTCCATATAATAATCGGATGCATGTAAAAGAGAAGGGAAACATCGCCATGTCGGCTACGGGTCCCATAAGTAATTATTATGTGGATTCCTTGATCAACCATGAGAGCGAGGATGTTCTAGCGAGTCGTTTCACAGCCACCGGTCCGATATCCTCCAGCTCACGCCCGACGCCCCTGGTACCGGAATGCGCGGATTACCCGTCTTGCAGCTTTGCCCCGAAACCACCAGTCTTTACTACCTCGTGGGCCCCTGTTCACTCCCAGTCGTCAGTGGTTTACCATCCATACACTCACCAACCTCACCTAGGCACAGACTCAAGGTACGTTCGCTCTTGGCTGGAGCCTATCCCCGGCACCGTGTCTTTTCCAGGATACGCAGGGAATAGCAGGCACTACGGGCTGAAGCCCGACACCTTCCAGGATCCCCGCGCCGGAGACTGTTTGGGCTCAAACGGACGCACTTACACGGATTATCTCTACTGCTCTGCCGTCGACATTCGAGAAAAGCAACAAAACACGCCATCGCCTGAGACGGAAAGTCTGTCTTCCGGGAAGCACAAAGACGACAAGGCTGAATTAGACCCGAATAATCCTGTGGCAAACTGGATCCACGCGCGCTCGACCCGAAAGAAGCGTTGTCCGTACACCAAGTATCAAACACTCGAACTCGAAAAGGAGTTTTTATTCAACATGTACCTCACAAGAGACCGGCGATACGAGGTAGCGAGGGTGCTGAACCTGACGGAGCGACAGGTCAAAATCTGGTTCCAGAACCGAcggatgaagatgaagaaaatgaacaaagaaaaaaacgacAGCAAGGAACAATAGACCAAAAAAAAGCCGCGCTCATCAAAAGACTGAAGGAAGATCATCGTTAGCATCGTTACGAGTCTTAACGTTCGCGCCTCCGGCCCGTAAACAGGAAAGGGAGAAAACGAAAAGGCCGTCCTCGCGTGGATGGCCGTCAAAACGCGATTATATACGTATGATTTAATGTAAGTGTAATTTTACCATCCTGACGCGAGTCGTATTAATGCGTAGTTTGGATTTGCGTAACATTTCTTTACTCACAAATACGAAAGTGGACTCCGCGGAGAGGCTGCCCCGAAGTTTCAGAGAGAAAAATACTTGAActactttattttcaaattccTAATTTATGCTCTCCACGTGGCTGTCTCTTTTCTACGCTTCCATTATTTGTAGGAGGTCCGAAAGCCgaatattttataaagaataacaattctgtagtttaaaaaaagtatatatatatgcatatatatatatacgtgttcGCGTCGATGTGCTTAGTTTGTTTCTGATGTAcctgtttgtgtattttacatTCTTTAAACTGTAAATGAGTTTCATCATAGATTGTAGATATATCCAAATATATACAACCATGTTAATATGGCTTTTTTTGTGTCTCATTCCGTTTATTTGGGGGGGGAGAACGAGCGCTAACCGGTCATATCGTGGAGTTTGGCCTGCACGCGCAATGCTCTCACGCGGAAAGCACCGAGGTTGGAGTAAGCGCGCAATGGCAAGGTTATTGTGAAGAGGCTGTTTGTTGGTTGCGACCGTCGAAATGTCAGATTCGAGCATCCCACAAAGAGCAAACGCCGAAACGCCCGCGGCAGGCCTCGTCCTCTCCCGCGCCTCGCTCACATTTCGCCATTTAACTCGAATCCAGCTTCCAAAGCCCTCTTccctcatttttaaaattcGATTCGATTTCACCCTgagatgtaaataaaacaaataaatagatga

Function

symbol description
hoxc9a Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of vasculogenesis and positive regulation of lymphangiogenesis. Predicted to be active in nucleus. Is expressed in several structures, including CNS interneuron; axial vasculature; neural tube; pectoral fin bud; and spinal cord. Orthologous to human HOXC9 (homeobox C9).

NR:

description
homeobox protein Hox-C9

GO:

id name namespace
GO:2001213 negative regulation of vasculogenesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09294 HOX_9; homeobox protein HoxB/C/D9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224331.1 True 4087 mRNA 0.42 2 18361054 18366240

Neighbor

gene id symbol gene type direction distance location
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding downstream 2673 18355661 ~ 18358381 (-)
hoxc5a hoxc5a,LOC107664112,LOC107593967,LOC107664111,LOC107697940,LOC107715000,LOC107706972,LOC107598908 coding downstream 19820 18339049 ~ 18341234 (-)
hoxc4a hoxc4a,hoxc4,LOC107664204,LOC107714997,LOC107598886,LOC108433407,LOC103034018 coding downstream 30353 18316637 ~ 18330701 (-)
hoxc3a LOC107714998,LOC107593965,LOC107664206,LOC107697835,LOC107706962 coding downstream 44292 18314833 ~ 18316762 (-)
copz1 copz1,LOC107664248 coding downstream 140674 18214578 ~ 18220380 (-)
hoxc11a hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846 coding upstream 13714 18379954 ~ 18382930 (-)
hoxc12a hoxc12a,LOC107664239,LOC107593973,LOC107715004,LOC107697936,LOC107707010 coding upstream 25710 18391950 ~ 18393519 (-)
hoxc13a hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009 coding upstream 34757 18400997 ~ 18403756 (-)
rarga rarga,rarg,LOC107715005,LOC107707012,LOC107593976,LOC107697942,LOC107664174 coding upstream 90685 18456925 ~ 18507741 (-)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding upstream 169472 18535712 ~ 18545493 (-)
G158955 NA non-coding downstream 114227 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 122522 18237897 ~ 18238532 (-)
G158952 NA non-coding downstream 154596 18206143 ~ 18206458 (-)
G158950 NA non-coding downstream 157602 18203036 ~ 18203452 (-)
G158949 NA non-coding downstream 160088 18200767 ~ 18200966 (-)
LOC122328626 NA non-coding upstream 55619 18421859 ~ 18456506 (-)
G158984 NA non-coding upstream 74410 18440650 ~ 18442479 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding upstream 193180 18559420 ~ 18563142 (-)
LOC122329081 NA non-coding upstream 247436 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 276022 18642262 ~ 18644688 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 10707 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 58479 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 125518 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 302315 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 938537 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 381151 18747391 ~ 18754712 (-)

Expression


Co-expression Network