irak1bp1 (irak1bp1,LOC107656539,LOC107708805,LOC107571105,LOC107701704,LOC107549065,LOC107756383)


Basic Information

Item Value
gene id irak1bp1
gene name irak1bp1,LOC107656539,LOC107708805,LOC107571105,LOC107701704,LOC107549065,LOC107756383
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 9758867 ~ 9760617 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224538.1
TTTTCCCGCCATGCACTGGATACGTTACCATAGCGCCACGTTGGTTTACCAACAAACATGGCGCACAGCCCGTCTCATGTCTTTGCTACAGTTTCACCGAACGCTGGTGATGTTTACCGAGACGAAAACGAATCGGGGTTTAACCGGGGCCGCAAGCAAACACCTTCACGCGCACAAAGCAACGCAAGAGTGGTTCAGATGACCGGCTGCGCGGAGTTATCTTGTCCTCCGGACCGCGCCAGCGTCACCATCAGCGtgaaaaacagcaaagaaaatGTTATCGACGTGACTAACAGCATTTCCCGACGACTGGAGTACATACTACAGACCGTGAGACAGCATGATGTCAAGGAAGAAAACATCACTGTGACCAAGCACTTACAAAGAGAGGAAGAGCTCTTTCACATGCAGGCTGAGGTGCTTGTGGTGTTTTTAGACTTTGAGAAGATGGAGCAAGCGCGCTCCGTTTTGATTGAAAAACTTGACAAAATCGTGTGTGTTGGCGCCCCTTACTACAGTCACAGTGCGGAAAGTCTCAGTTTGTTAAGACGGCGAGTGTGTTTGGAAGCCGTGGACAACGCCCGGCTAAAAGCCAGCGAGGCGTGTTGCATTCTGGGACAGGCTCTGGGACGGCCGCTGCTTTTACGCGAGGAGGAATCACGGGAGTGGATGAGCGACCAGCATGAAGCGACTGGCTTTCATCTGACACTACACCAGAAGACCGGGGTTACATTAGTCTCTGCCTCTTCACGCGTCTTTGTGACCTTTGAATTGCGCCCGAAGAACAGCAACAGGAGgaaattttgaacattttgtttccGTTTATCAGTATTAAATAGTGCGTGTAATTCCTTTTTGTTATCTCATTTTGACCTGTAAACACACAGTACTGTGAAGTGAGCGCCACAGATACGCCACTGATATTCACAGAAAGCCTAAAAATAAAGTCACCACTTGTTCCTActggtttttattaaatacagtcATCCAATCCAATTTATACTGTTGAGCgcttttatactgttcagtgcttttatACAACcggtgttgttaaaagtgctatataaataaaaatgattgattgaattcCAGAATATATTGAATAACACTGCGTGCTAAATTGGTTCCAAGCATTGATATAAAGCATTGTTAAAGTCTAAAGTGTAATGATAGAGAAAGATGAGTCTGTGTTTGAATAGAGAGTACATTTATATTGATGTGTACTTAATAGTTGATCATTGTTTATTTCTACAACAACGTATGTCTAGACAGGTGCTAGACAACTAGAAAGATCTTATTCGCTGCCTCTAATATGATTTGTCTTTAAACTTAAACCTGCACTGGATGTATAGGGGAAAATGTACAATAGTGTGGAATATAGTGTGCAATATGCTTTGTTTCTGTGATTCTACAcccatttttgttttcctttgtcAGATGATCTGTCTTGACACTAAACAGGCCATTCATACCCTG

Function

symbol description
irak1bp1 Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within immune response. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human IRAK1BP1 (interleukin 1 receptor associated kinase 1 binding protein 1).

NR:

description
interleukin-1 receptor-associated kinase 1-binding protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224538.1 True 1476 mRNA 0.43 4 9758867 9760617

Neighbor

gene id symbol gene type direction distance location
tbx18 tbx18,LOC107708785,LOC107656541,LOC107756382,LOC107701724 coding upstream 53183 9696640 ~ 9705684 (+)
selenoi si:ch211-197l9.4,selenoi,LOC107656545,LOC107708808,LOC107571075,LOC107549067,LOC107701725,LOC107756381 coding upstream 99382 9649897 ~ 9659485 (+)
si:ch211-197l9.2 LOC107708809,LOC107756380,LOC107656534,LOC107549068,LOC107701723 coding upstream 110398 9635094 ~ 9648469 (+)
cables2a cables2a,LOC107656547,LOC107708813,LOC107756377,LOC107571009,LOC107549038,LOC107701719 coding upstream 143371 9601928 ~ 9615496 (+)
xkr5l zgc:198371,LOC107708814,LOC107656543,LOC107701703,LOC107756376,LOC107571628,LOC107575995 coding upstream 158699 9587075 ~ 9600168 (+)
sh3bgrl2 sh3bgrl2,LOC107671851,LOC107701732,LOC107708803,LOC107571206,LOC106608335 coding downstream 62192 9822809 ~ 9830190 (+)
rps12 rps12,LOC107671850 coding downstream 73707 9834324 ~ 9837182 (+)
LOC122329334 NA coding downstream 74479 9835096 ~ 9835170 (+)
LOC122329332 NA coding downstream 74778 9835395 ~ 9835479 (+)
tbpl1 tbpl1,LOC107571264,LOC107756392,LOC107671848,LOC107549057,LOC107723755,LOC107701734 coding downstream 143606 9904223 ~ 9908862 (+)
G156047 NA non-coding upstream 119041 9622479 ~ 9639826 (+)
G156034 NA non-coding upstream 174287 9584169 ~ 9584580 (+)
G155985 NA non-coding upstream 544413 9214140 ~ 9214454 (+)
G155984 NA non-coding upstream 545160 9213155 ~ 9213707 (+)
G155860 slc25a33,LOC107695765,LOC107708828,LOC107681985 non-coding upstream 620677 9135416 ~ 9138190 (+)
G156096 NA non-coding downstream 42079 9802696 ~ 9808280 (+)
G156098 NA non-coding downstream 52600 9813217 ~ 9815309 (+)
G156109 NA non-coding downstream 120145 9880762 ~ 9973534 (+)
LOC122328703 NA non-coding downstream 124428 9885045 ~ 9888379 (+)
G156108 sgk1 non-coding downstream 161524 9922141 ~ 9923225 (+)
G155927 zgc:194189,LOC107570831,LOC107708788,LOC107681978,LOC107695725,LOC107586555,LOC107718823 other upstream 636474 9120884 ~ 9122393 (+)
lzic lzic,LOC107708836,LOC107718820,LOC107681991,LOC107570802,LOC107695771,LOC107586557 other upstream 657495 8941031 ~ 9101372 (+)
G155799 NA other upstream 1270226 8488086 ~ 8488641 (+)
LOC122328506 klhl14,LOC107677170,LOC107599684,LOC107554641,LOC107717384 other upstream 1425491 8321705 ~ 8333376 (+)
tcea2 tcea2,LOC107681409,LOC107551521,LOC107705683,LOC107571665,LOC107666524 other upstream 2453333 7298360 ~ 7305534 (+)
plagx plagx,LOC107723745,LOC107572778,LOC107756402,LOC107671865,LOC107549050,LOC107701746 other downstream 310163 10070780 ~ 10089818 (+)
LOC122328781 pifo other downstream 569234 10329851 ~ 10363818 (+)
LOC122328383 tbx15,tbx18,LOC107712261,LOC107708785,LOC107656541 other downstream 655046 10415663 ~ 10427162 (+)
LOC122328447 LOC107603155,LOC107707751,LOC107672009 other downstream 754362 10514979 ~ 10518751 (+)
LOC122329061 fkbp1ab,fkbp1a,LOC107707744,LOC107657066,LOC107747971,LOC108435222,LOC107559476,LOC100705189,LOC105013763,LOC101476936 other downstream 790480 10551097 ~ 10554720 (+)

Expression


Co-expression Network