G15989


Basic Information

Item Value
gene id G15989
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5606519 ~ 5612278 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU17885
ACTGAACTGGACTCGCAATTGTGTGTCAACACGATTCAACACAATTCAGATATAAATCCAAACCATGTCAACCCATCTATTAAGTTTCAAGTGAAGTGTGATATGCAGCTCAAATCTCAGCTAACATACAATGGGGGCTTTAACCAGTGCCAGAGATTTCACTGATAATCTGTGCATTTTATATATTGCTTTCAAACTATTCTTCATTCTGATGACAACATTAAAGGTGCTGTAAGCAATTTTGGGAATACCACACCTGAAAATGTAACTATAATCTGACAGATATCACTGAAATAGGTGTCCTGAGATTTCACACCTGTCTCTGTGACAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACATCCCCACAAGTTGTTCGGGAGGGTTTCAAGAAAAATCCTCTGCTCTCATCCAGAAACAATCTCCAGCATATTCAGTTGTCAGACACGACTGGAACTTCAAACGAGTCCGGCTTCTATGGTCAGATGAAACTAAAAAAAAAAGAGATTTTTGGCAGCAAACCCACCAGATGGGTTTGGTGCACACATGGATAAAAAGTACCCCATGTCCACAGTTAAATATACTGCTGGATCTTTAATTATTTTTGTGCCAGAGGTCCTGGACATCTTGTTCAGATATATGGTATCATGAATTCTATCAAATACCAACAGATTAAAAAGATCTAAACCTGACCACTTCTGCTAGAAATCCAATAATGGGCCGTGGCTGGATCTTCCATCAGGACAATGATCCAAAACAAACACAAAAATGTGTCACTGAGCACAAAATGAAGCTTCTGCCATGGCCGTCCCAGTCCCCTGACCTGAGCCCTAAAGAAAATGAGTGGAGTGAACTGAAGAGAACAAGCACCAACATGGAGCTGGGAATCTGAAGGATCTGGAGAGATTCCGCATGAAGAAATGGTCTCTGATCTCTTGTCAGGTGTTCTCCAAACTCATCAGGCATTATAGGTGAAGACTCAGAGCTGTTATCTTGGCAAAAGGAGGTTGCAAAAAGTATTGAATAAAAGGGTGCCAATAATTGTGGCCAGTGTGTTTTGGAGAAAAACATTCATTTCATAATGTGAAATTCCCCCCACTTTGAATTCTTTTCCTTCAATGAAAGGTTAGATTTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU17885 True 1138 lncRNA 0.39 2 5606519 5612278

Neighbor

gene id symbol gene type direction distance location
CI01000001_05587090_05591952 APOBEC2B, APOBEC2 coding upstream 14381 5587090 ~ 5592138 (+)
CI01000001_05581818_05584137 NA coding upstream 21898 5581818 ~ 5584621 (+)
CI01000001_05579315_05580553 CCDC115 coding upstream 25816 5579315 ~ 5580703 (+)
CI01000001_05565644_05568075 NA coding upstream 38031 5565644 ~ 5568488 (+)
CI01000001_05498507_05500723 NA coding upstream 105403 5498210 ~ 5501377 (+)
CI01000001_05689002_05702184 NA coding downstream 76377 5688655 ~ 5702684 (+)
CI01000001_05734513_05735964 NA coding downstream 120843 5733121 ~ 5736013 (+)
CI01000001_05795264_05798555 ATP6AP1LB coding downstream 182986 5795264 ~ 5799834 (+)
CI01000001_05803416_05809184 SLMAPB coding downstream 191138 5803416 ~ 5809306 (+)
CI01000001_05814686_05836203 NA coding downstream 202368 5814646 ~ 5837238 (+)
G15985 NA non-coding upstream 5079 5601156 ~ 5601440 (+)
G15984 NA non-coding upstream 6016 5600223 ~ 5600503 (+)
G15983 NA non-coding upstream 7259 5598838 ~ 5599260 (+)
G15978 NA non-coding upstream 28487 5577410 ~ 5578032 (+)
G15980 NA non-coding upstream 34307 5571923 ~ 5572212 (+)
G15987 NA non-coding downstream 56 5612334 ~ 5613782 (+)
G15991 NA non-coding downstream 14329 5626607 ~ 5626851 (+)
G15993 NA non-coding downstream 17576 5629854 ~ 5630088 (+)
G15998 NA non-coding downstream 33668 5645946 ~ 5646215 (+)
G15999 NA non-coding downstream 34956 5647234 ~ 5647464 (+)
CI01000001_05279884_05287123 NA other upstream 316563 5279837 ~ 5287698 (+)
G15794 NA other upstream 541815 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 1985068 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 3935515 1667762 ~ 1671167 (+)
G13051 NA other upstream 4561367 1043713 ~ 1045152 (+)
G15995 NA other downstream 99607 5711885 ~ 5714951 (+)
CI01000001_07531945_07539781 NA other downstream 1920294 7531541 ~ 7540586 (+)
G17234 NA other downstream 2419846 8032124 ~ 8032483 (+)
G17353 NA other downstream 3603744 9216022 ~ 9228859 (+)
G17354 NA other downstream 3622185 9234463 ~ 9240677 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G156685 NA non-coding NC_056721.1 CM032090.1 11540640 ~ 11555919 (+)