hnrnpa1b (hnrnpa1b,LOC107664187,LOC107714994,LOC107707002)


Basic Information

Item Value
gene id hnrnpa1b
gene name hnrnpa1b,LOC107664187,LOC107714994,LOC107707002
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18231643 ~ 18235536 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224577.1
GAAGCCTAAACCAATCAGCTCCAGCAGTAGGAGGGAACTGTATTTGCTCGCGCTATTTATGGTATCTCCCCACTTCTCAGTGTGTGTCTCACCGACAAGCGTGTGGCGCAGCACGGGCAGAAATAGTCGGTAGGATGTCCAAAGAGGGCCAACCACGTGAGCCAGAGCAGCTGCGGAAGCTCTTCATTGGAGGGCTCAGCTTTGAAACCACAGACGATAGTTTGCGGGCGCATTTTGAACAATGGGGCACCTTAACGGATTGCGTGGTGATGAAAGATCCAAACACCAAACGCTCCAGGGGCTTTGGGTTTGTTACTTATTCCAGCGTGTCTGAAGTTGATGCTGCTATGGATGCACGACCCCACAAGGTCGACGGTAGGCTTGTGGAGCCCAAACGAGCCGTGTCTCGAGAGgACTCCAACAAGCCGTTTGCTCACACAACGGTGAAGAAGATATTTGTCGGTGGCATTAAAGATGATACTGAGGAGGACCATCTTCGTGACTACTTCAAACAGTTTGGCAAAATTGAGGCCGTTGAGATAATGGTTGACCACAAGACCGGAAACAAAAGAGGCTTTGCCTTTGTTACATTTGATGACCATGACTCAGTTGACCGTATTGTCATTCAAAAATACCACACTGTGAATGGGCACAACTGTGAAGTCAGAAAAGCTCTGTCTAAACAAGAGATGCAGAACACTGGCATGAACTCAAGAGGCCgtggtggtggaggaggaggaggaggaggtggtggcggcggtggtggaggaggaggaaactTCAACAGATATGGCAATAATGGCGGCTACAACAATGACTTTGGTGGCGGTGGCAACCGTGATGGATATTTTGGAAGAGGAGGCAGAGGTGGTGGAGGTGGCGGTTATGGAGGTGACTGCTACAACAACGGATTTGGTGGAGGAGATGGTAACTATGGTAGTGGCCCTGGTAACTATGGTGGAAACCGTGGATATGGAGGTGGCAGTGGAGGAGGTGGACATGGTTATGGCAACCAGGGTGGTGGTTATGGTGGCGGCGGCGGCAGCAGTGGTGGTGGCTATAATGACAATTACAACAACGGCAATGGAAACTTTGGGGGTGGCAACTTTGGAGGAGGTGGTGGCAGTGGAGGTGGTAACTACAATGACTTTGGCAACTATAACAACCAGCAGTCAAACTATGGTCCTATGAAAGGGAACTTTGGAAGTGGCGGAGGTGGTAGAAACAGTGGCCCATATGGTGGTGGCTATGGCGGTGGATCTGGTGGTGGATATGGAGGCGGCTCTGGTGGTAGACGGTTTTAAACTCAAAGGACTGAGTGCTTTAGGAGAGGAGAGCGAGAGAAGTGACAGGGCAGATGCAGGTTTACATCCCTAGATCTGCTCAGCCAAACAGGTGTGGCAGATTTACAGCTGCCACCAGAAGAAGTGTACAGTAGCGCTATCATGTGTGGGACATCATGAATTTGTCATCATGCAGACTTATTTTATATTGTCTATGGAAAAGCATTCCAATGAGGTTTTATGTAGAACTACAGTCTTTATGGTTTTGATTTTTATGTAACCAATCAAggtgaaataaaacatcatttttgttttttttaa
>XM_043224578.1
GAAGCCTAAACCAATCAGCTCCAGCAGTAGGAGGGAACTGTATTTGCTCGCGCTATTTATGGTATCTCCCCACTTCTCAGTGTGTGTCTCACCGACAAGCGTGTGGCGCAGCACGGGCAGAAATAGTCGGTAGGATGTCCAAAGAGGGCCAACCACGTGAGCCAGAGCAGCTGCGGAAGCTCTTCATTGGAGGGCTCAGCTTTGAAACCACAGACGATAGTTTGCGGGCGCATTTTGAACAATGGGGCACCTTAACGGATTGCGTGGTGATGAAAGATCCAAACACCAAACGCTCCAGGGGCTTTGGGTTTGTTACTTATTCCAGCGTGTCTGAAGTTGATGCTGCTATGGATGCACGACCCCACAAGGTCGACGGTAGGCTTGTGGAGCCCAAACGAGCCGTGTCTCGAGAGgACTCCAACAAGCCGTTTGCTCACACAACGGTGAAGAAGATATTTGTCGGTGGCATTAAAGATGATACTGAGGAGGACCATCTTCGTGACTACTTCAAACAGTTTGGCAAAATTGAGGCCGTTGAGATAATGGTTGACCACAAGACCGGAAACAAAAGAGGCTTTGCCTTTGTTACATTTGATGACCATGACTCAGTTGACCGTATTGTCATTCAAAAATACCACACTGTGAATGGGCACAACTGTGAAGTCAGAAAAGCTCTGTCTAAACAAGAGATGCAGAACACTGGCATGAACTCAAGAGGCCgtggtggtggaggaggaggaggaggaggtggtggcggcggtggtggaggaggaggaaactTCAACAGATATGGCAATAATGGCGGCTACAACAATGACTTTGGTGGCGGTGGCAACCGTGATGGATATTTTGGAAGAGGAGGCAGAGGTGGTGGAGGTGGCGGTTATGGAGGTGACTGCTACAACAACGGATTTGGTGGAGGAGATGGTAACTATGGTAGTGGCCCTGGTAACTATGGTGGAAACCGTGGATATGGAGGTGGCAGTGGAGGAGGTGGACATGGTTATGGCAACCAGGGTGGTGGTTATGGTGGCGGCGGCGGCAGCAGTGGTGGTGGCTATAATGACAATTACAACAACGGCAATGGAAACTTTGGGGGTGGCAACTTTGGAGGAGGTGGTGGCAGTGGAGGTGGTAACTACAATGACTTTGGCAACTATAACAACCAGCAGTCAAACTATGGTCCTATGAAAGGGAACTTTGGAAGTGGCGGAGGTGGTAGAAACAGTGGCCCATATGGTGGTGGCTATGGCGGTGGATCTGGTGGTGGATATGGAGGCGGCTCTGGTGGTAGACGGTTTTAAACTCAAAGGAACTGATGAGTGAAGGCATCTCTTGAAATGACAAGGCATTTGTCTGCCTAAACCAGTGAAATGATAAAAGG
>XR_006247822.1
GAAGCCTAAACCAATCAGCTCCAGCAGTAGGAGGGAACTGTATTTGCTCGCGCTATTTATGGTATCTCCCCACTTCTCAGTGTGTGTCTCACCGACAAGCGTGTGGCGCAGCACGGGCAGAAATAGTCGGTAGGATGTCCAAAGAGGGCCAACCACGTGAGCCAGAGCAGCTGCGGAAGCTCTTCATTGGAGGGCTCAGCTTTGAAACCACAGACGATAGTTTGCGGGCGCATTTTGAACAATGGGGCACCTTAACGGATTGCGTGGTGATGAAAGATCCAAACACCAAACGCTCCAGGGGCTTTGGGTTTGTTACTTATTCCAGCGTGTCTGAAGTTGATGCTGCTATGGATGCACGACCCCACAAGGTCGACGGTAGGCTTGTGGAGCCCAAACGAGCCGTGTCTCGAGAGgACTCCAACAAGCCGTTTGCTCACACAACGGTGAAGAAGATATTTGTCGGTGGCATTAAAGATGATACTGAGGAGGACCATCTTCGTGACTACTTCAAACAGTTTGGCAAAATTGAGGCCGTTGAGATAATGGTTGACCACAAGACCGGAAACAAAAGAGGCTTTGCCTTTGTTACATTTGATGACCATGACTCAGTTGACCGTATTGTCATTCAAAAATACCACACTGTGAATGGGCACAACTGTGAAGTCAGAAAAGCTCTGTCTAAACAAGAGATGCAGAACACTGGCATGAACTCAAGAGGCCgtggtggtggaggaggaggaggaggaggtggtggcggcggtggtggaggaggaggaaactTCAACAGATATGGCAATAATGGCGGCTACAACAATGACTTTGGTGGCGGTGGCAACCGTGATGGATATTTTGGAAGAGGAGGCAGAGGTGGTGGAGGTGGCGGTTATGGAGGTGACTGCTACAACAACGGATTTGGTGGAGGAGATGGTAACTATGGTAGTGGCCCTGGTAACTATGGTGGAAACCGTGGATATGGAGGTGGCAGTGGAGGAGGTGGACATGGTTATGGCAACCAGGGTGGTGGTTATGGTGGCGGCGGCGGCAGCAGTGGTGGTGGCTATAATGACAATTACAACAACGGCAATGGAAACTTTGGGGGTGGCAACTTTGGAGGAGGTGGTGGCAGTGGAGGTGGTAACTACAATGACTTTGGCAACTATAACAACCAGCAGTCAAACTATGGTCCTATGAAAGGGAACTTTGGAAGTGGCGGAGGTGGTAGAAACAGTGGCCCATATGGTGGTGGCTATGGCGGTGGATCTGGTGGTGGATATGGAGGCGGCTCTGGTGGTAGACGGTTTTAAACTCAAAGGAACTGATGAGTGAAGGCATCTCTTGAAATGACAAGGCATTTGTCTGCCTAAACCAGTGAAATGATAAAAGgaccAAAATGCAGCTgaagagattttattttattacctggtttttaccttttttacc

Function

symbol description
hnrnpa1b Predicted to enable RNA binding activity. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Is expressed in brain; gut; retina; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein A1

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12741 HNRNPA1_3; heterogeneous nuclear ribonucleoprotein A1/A3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224577.1 True 1604 mRNA 0.49 11 18232409 18235536
XM_043224578.1 False 1384 mRNA 0.51 11 18231773 18235536
XR_006247822.1 False 1440 transcript 0.50 12 18231643 18235536

Neighbor

gene id symbol gene type direction distance location
copz1 copz1,LOC107664248 coding downstream 11263 18214578 ~ 18220380 (-)
lima1a LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921 coding downstream 54153 18162460 ~ 18177490 (-)
igfbp6b igfbp6b,LOC107714992,LOC107664167,LOC107593959,LOC107697925,LOC107599019,LOC105912701 coding downstream 107939 18120295 ~ 18123704 (-)
pip4k2ca pip4k2ca,LOC107714989,LOC107598997,LOC107664235,LOC107697923,LOC107593957 coding downstream 115317 18107885 ~ 18116326 (-)
gpr182 gpr182,LOC107664254,LOC107697920,LOC107593955,LOC107706991,LOC107599064 coding downstream 126523 18102311 ~ 18105120 (-)
hoxc3a LOC107714998,LOC107593965,LOC107664206,LOC107697835,LOC107706962 coding upstream 79297 18314833 ~ 18316762 (-)
hoxc4a hoxc4a,hoxc4,LOC107664204,LOC107714997,LOC107598886,LOC108433407,LOC103034018 coding upstream 81101 18316637 ~ 18330701 (-)
hoxc5a hoxc5a,LOC107664112,LOC107593967,LOC107664111,LOC107697940,LOC107715000,LOC107706972,LOC107598908 coding upstream 103513 18339049 ~ 18341234 (-)
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding upstream 120125 18355661 ~ 18358381 (-)
hoxc10a hoxc10a,LOC107593968,LOC107664221,LOC107714961,LOC107706973,LOC107598838,LOC107697934 coding upstream 120662 18356198 ~ 18376163 (-)
G158952 NA non-coding downstream 25185 18206143 ~ 18206458 (-)
G158950 NA non-coding downstream 28191 18203036 ~ 18203452 (-)
G158949 NA non-coding downstream 30677 18200767 ~ 18200966 (-)
G158948 LOC107599665,LOC107664257,LOC107714993,LOC107697859,LOC107706997 non-coding downstream 35274 18195399 ~ 18196369 (-)
G158946 NA non-coding downstream 37119 18194252 ~ 18194524 (-)
G158953 LOC107714996 non-coding upstream 2361 18237897 ~ 18238532 (-)
G158955 NA non-coding upstream 9387 18244923 ~ 18246827 (-)
LOC122328626 NA non-coding upstream 186323 18421859 ~ 18456506 (-)
G158984 NA non-coding upstream 205114 18440650 ~ 18442479 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding upstream 323884 18559420 ~ 18563142 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 172904 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 809126 17413703 ~ 17422517 (-)
G158609 NA other downstream 888258 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 1047258 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1872938 16355369 ~ 16358705 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 60510 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 106798 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 511855 18747391 ~ 18754712 (-)

Expression


Co-expression Network