apobec2b (apobec2b,LOC107737624,LOC107560928,LOC107672022,LOC107657013,LOC107712740)


Basic Information

Item Value
gene id apobec2b
gene name apobec2b,LOC107737624,LOC107560928,LOC107672022,LOC107657013,LOC107712740
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 11527406 ~ 11529661 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224590.1
AATATCCTGATCTAAAGGGGAAGGAAATACCTGATGAATGTGGGTTATATGCCATTAAGTATCAGTGCTCATTACACATTTGAAATCGAGGAAGAGGAAAACAGCTACTTGATGCACCTGTTGGACAAAATGGGTTGTGACGCGTTTAAACAATGAACGTATAAAATTCCAGCCCCCTATTatattttagcctttttttagAATGGAAACAAGAGAGCAGCTGCCCTTCagtctccccctctctctgacCAGCTCCTGTTTGTCAGAGAGTTATCTTTATCTTCATCTTTAACTCTCAGACTTAGGAACATATTCAGGCTGTCATCTCTCTGACTCACATGCTAAATCAACAGCACCCTTCACAGGCTCACAGCTAGCAGACTCATTTCAGCCATGGCGGACAGAAAGGACAGCAAGATCCCCGGTAAAGGCAACctgatgaagaagaaagaaaagaaagtggaGAAAGCCGAGAGCAAACCtgaaaaggagaaagaaaaaaacaaagataaaggCGAAAAGGAGACAAAGAAGCCAGAGAAGACCcaagaaaatcagcaaaaaaatgAGGAGACGCCTCAAGGAAATGGGGAGGTGGCAGAAGGAGCCAAAGGCCCTGTCAAAGATGAGGAGTTTGAGCTGGAGCCTATGGAGCTGCCTCCATTTGAGATCATTGTAGGAGACAGAATGAACCCGACCTTCTTTAAGttccaatttaaaaatgtggaaTATTCCTCCGGACGCAACAAGACCTTCCTGTGCTACCAGGTAGACATTCAAGGAGGCGCTGGGGAGACAGAAGGCCTTCGCGGCTACCTGGAAGATGAGCACTCGGGTTCACACGCTGAAGAGGCCTTCTTTCAACAGGTGCTGGCCTATTATGACAAGTCACTCCACTACACAGTGACCTGGTACATGTCCTCGAGCCCGTGCGCAGCCTGCGCTGCTAAGCTCGTAGAGATCCTGCGAGCACGCAAGGCAATGCGCCTTAATATCCACTGCTCCCGTCTCTTCCAGTGGGAGGAAGCAGAGATACAGGCCGGACTTCAGGCACTAGTTGGGGCGGGGTGTAAAATACGCATGATGAGGCCGGTGGATTTTGCGTATGTTTGGTCTACGTTCGTTGAGAATGAGGAAGATAACTTTACACCCTGGGAGGACTGTCAAGATAACTACGATTATTATGATGAGAAATTGTGTGATATTTTAAAGTAGGGTAAGGAGCCGCTGCTGGCTTCTGATTAAGACTGTTAAAAACAACCTGAGCACCGCCTTTAAGCGgattttgtaattaaaagctAATTATAACAATGTCCCTGTAATGACAACAGCATTGTTTTGTCTGTCAACACTATTCATCCTGTTAAATCACTTTGTTGACTTTACCGAATTTAAAGTCATGAATTCaaaccacaaaaatatataagtaatactaaatattattttaagaaaaagttaaaatatttgggTGAAAAATTCAAGTATAAAATTCCAGTTAACTCTAAGCAAATTATTTTGCTAAGTAAAATATAGTTTGACCTAAGCATCATACTTATttcgttttttaattttattttttaattattattaaattatatgatgAGTTTTGGCATCGCGGACAGTGTCCctgtatataaaacaataaacatgagTCAATTTCCTACCATGAGCACAATCTAAA

Function

symbol description
apobec2b Predicted to enable RNA binding activity and cytidine deaminase activity. Acts upstream of or within several processes, including cell dedifferentiation; sensory epithelium regeneration; and skeletal muscle organ development. Predicted to be active in cytoplasm and nucleus. Is expressed in retina. Orthologous to human APOBEC2 (apolipoprotein B mRNA editing enzyme catalytic subunit 2).

NR:

description
PREDICTED: probable C->U-editing enzyme APOBEC-2

GO: NA

KEGG:

id description
K18772 APOBEC2; C->U-editing enzyme APOBEC2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224590.1 True 1681 mRNA 0.42 2 11527406 11529661

Neighbor

gene id symbol gene type direction distance location
si:dkey-109j17.5 si:dkey-109j17.5,LOC107672024,LOC107737623,LOC107560927,LOC107562462,LOC107657015,LOC107712743 coding upstream 2538 11520750 ~ 11524868 (+)
ccdc115 LOC107560885,LOC107737721,LOC107672061,LOC107657017,LOC107562463,LOC107712745 coding upstream 6801 11518832 ~ 11520605 (+)
trnae-uuc_33 NA coding upstream 8870 11518465 ~ 11518536 (+)
trnaf-gaa_120 NA coding upstream 11535 11515799 ~ 11515871 (+)
trnan-guu_36 NA coding upstream 13560 11513773 ~ 11513846 (+)
LOC122328536 LOC107737719,LOC107671965,LOC107560886,LOC107656999,LOC107570275,LOC107712682,LOC101883217 coding downstream 104615 11634276 ~ 11638023 (+)
atp6ap1lb atp6ap1lb,LOC107672058,LOC107737620,LOC107560932,LOC107570286,LOC103031199,LOC108436292,LOC107699574,LOC105890636 coding downstream 156051 11685712 ~ 11693491 (+)
slmapb slmapb,LOC107560933,LOC107712736,LOC107699575 coding downstream 166155 11695816 ~ 11704390 (+)
flnb LOC107737717,LOC107560870,LOC107671935 coding downstream 176098 11705759 ~ 11722286 (+)
abhd6b abhd6b,LOC107737716,LOC107712730,LOC107560889,LOC107671974,LOC107699577 coding downstream 193495 11723156 ~ 11726492 (+)
G156633 NA non-coding upstream 194479 11331742 ~ 11332927 (+)
G156592 NA non-coding upstream 213803 11219035 ~ 11313603 (+)
G156599 NA non-coding upstream 215919 11245551 ~ 11311487 (+)
G156590 NA non-coding upstream 284370 11211041 ~ 11243036 (+)
G156568 NA non-coding upstream 375359 11148863 ~ 11152047 (+)
G156681 NA non-coding downstream 2974 11532635 ~ 11533198 (+)
G156682 NA non-coding downstream 4929 11534590 ~ 11534917 (+)
G156684 NA non-coding downstream 9954 11539615 ~ 11540315 (+)
G156685 NA non-coding downstream 10979 11540640 ~ 11555919 (+)
G156690 fam208ab,LOC107737622,LOC107712737,LOC107570279 non-coding downstream 84469 11614130 ~ 11651107 (+)
G156586 NA other upstream 350373 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 441802 11077154 ~ 11085604 (+)
G156497 trim101,LOC107671958,LOC107560876,LOC107719918,LOC107656995,LOC107747989 other upstream 603418 10913904 ~ 10923988 (+)
G156414 LOC107707743,LOC107747988,LOC107671949,LOC107559475 other upstream 826511 10698798 ~ 10700895 (+)
G156399 LOC107707753,LOC107672006,LOC107603149 other upstream 955160 10563344 ~ 10572246 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other downstream 167753 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other downstream 201319 11730980 ~ 11732361 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other downstream 716532 12246193 ~ 12251982 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 2564417 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 2770040 14299701 ~ 14343274 (+)

Expression


Co-expression Network