LOC122328910 (aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761)


Basic Information

Item Value
gene id LOC122328910
gene name aagab,LOC107596965,LOC107686304,LOC107738712,LOC107718310,LOC107672261,LOC107583761
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 15074016 ~ 15077510 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043224992.1
AAGTAAGTTGAGGTTAGAGGTGAAAGGTTTTCTGGAGGTGGTTGACAGCAAGTGCTAACTTTCATTAGGAGCTGTTTTTAAGTGTCCAAAAGCTTAAAATGGCAGATGATCAAGGAGATGAAGTACTTCCTCTGCCTTGTATCTTAGTCACAAGTTGTGATTCCAGCTTTAAAGAAGAGGAGCTCGTTAGACaGATATTGGGCTCAGAATCACTACCTCAAGCTACCAAGACAGAGGAAAGAGTTTCTTGGTATCCATGGACAATCAACAACAAGTACTACACAGCAAACGTCAGCCTATGTGTCGTATCAAGTCCATTCGACATGAATGCAGAGGTTGCCCGGTCTATGCAAGCGTTCATCATTTACTTTGACAGCAAAACTAAAGACGGCCTAAACAGTGTCAACTCCTGGTTATCAGTAGTGGAGGATTTGGCTCCAGAAGTGCTGATCCTGGTGTGTGACCATGCGCGCGACAGTGGTGTTAGCAAGCAAGAGGCCCAGCAGTGGTGTCTGGCCCATGCCTTTGAATTAGTAGAGCTCAGCCCTCAAGATCTGCCCGATGAAGACGATGACTTCCCAGAGTCCACTGGAGTAAAAAGAATCGTTCAGGCCCTCAATGCCAACGTGTGGTCCAGCGTCGAGATGAAAGATGAGCACAGTCAGGGATTTGGGCTAATGAGCAGCCTGGTGGCCTCTCATCACAACAACCCACGACCTAGTCAAGAAACACTGTCCTCTCATTCCCCATCCAACAGTACAGATGAAGGCACTGAGAGCCAGAGAGCAGAGAACAACCAGAATAATGCAGTAGATTCAGCAGTCGATCCCATGATTGACATAGACATACAGGAGTTGGCTAATCTAACAGCTGGAGATGCAGATGTGGAGAATTTTGAGCGACTTTTTACAAAATTGAAAGAGATGAaagaCAAGGCCTCTTCATTGCCACATGAACAGAGGAAAGTACATGCAGAAAAGGTCGCTAAAGCTTTCTGGATGGCTATTGGTGGAGATCAAGATGAGATTGACGGCTTGTCGTCAGGAGAGGAGAGTTAAGGCCCTTGCTTCCAGCGTTGATACTCAGCCCACCCTTTGAACCCCCAGCCATCCCAAATCTGCCCAGCCCAATCCCGTCCCGTCCGAGAAACATGGAAGAGTGTGGGCAAAAAAAGGCAATGGAAATTTTCACGAAACTGCCGTTACTCTGGCGTCAGTGTCCAGCACCTCAATCAGGCAGTAGAGTGATTATGGGCTTTTGGCTTCAAACACTGTAATCGCAGAGCCGTGGGACGGGTTGCAGGGGGGCAAGATTAACTTGCCTGTTCTCTGGCGGTGTCAGTGCAAGTCTGCAATCACATACAAGGACGAAGCCTATGGTTCTGTCAAAAGAGTTGTAAATCAAATGACGGATGAGCTGACAAAAGTGgattgtttttaaacttttattttgccgATGTAAGTCACAATTACGGACTAAGCTTGTGCATGTCATTAGCTCTTCATCAATTAAAATAACGATCTGTCGAATCA

Function

symbol description
aagab Predicted to enable GTP binding activity and GTPase activity. Human ortholog(s) of this gene implicated in punctate palmoplantar keratoderma type I. Orthologous to human AAGAB (alpha and gamma adaptin binding protein).

NR:

description
PREDICTED: alpha- and gamma-adaptin-binding protein p34-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K23878 AAGAB; alpha- and gamma-adaptin-binding protein p34

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043224992.1 True 1532 mRNA 0.46 10 15074016 15077510

Neighbor

gene id symbol gene type direction distance location
LOC122328909 LOC107715611,LOC107563070,LOC107690380,LOC107715213,LOC107693040,LOC107564380 coding upstream 303690 14759390 ~ 14770326 (+)
pfkfb1 pfkfb1,LOC107673088,LOC107737504,LOC107716165,LOC107574688,LOC107564646,LOC107695839 coding upstream 414084 14649780 ~ 14659932 (+)
si:dkey-78k11.9 LOC107737691,LOC107564648,LOC107574687,LOC107695840,LOC107716176 coding upstream 424784 14647107 ~ 14649232 (+)
ccn5 wisp2,LOC107564647,LOC107716172,LOC107695740,LOC107574719,LOC107574685 coding upstream 427054 14642391 ~ 14646962 (+)
ttpal ttpal,LOC107673079,LOC107568409,LOC107716173,LOC107695756,LOC107564663 coding upstream 470363 14600155 ~ 14603653 (+)
LOC122328905 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686 coding downstream 82240 15159750 ~ 15165538 (+)
ptpn22 LOC107737496,LOC107668554,LOC107570169,LOC107716160,LOC107695833,LOC107564640 coding downstream 246834 15324344 ~ 15338267 (+)
si:ch73-206d17.1 LOC107726152,LOC107571682,LOC107695830,LOC107568454 coding downstream 398213 15475723 ~ 15478611 (+)
zgc:158263 zgc:158263,LOC107716164,LOC107695826,LOC107568456,LOC107668552 coding downstream 523142 15600652 ~ 15608453 (+)
cacnb3b cacnb3b,LOC107695823,LOC107570227,LOC107668566,LOC104967530 coding downstream 595542 15673052 ~ 15685048 (+)
G157640 NA non-coding upstream 352531 14719934 ~ 14721485 (+)
G157634 NA non-coding upstream 371147 14702443 ~ 14702869 (+)
G157626 NA non-coding upstream 437895 14631840 ~ 14636121 (+)
G157624 NA non-coding upstream 444818 14627590 ~ 14629198 (+)
G157611 NA non-coding upstream 504507 14569132 ~ 14569509 (+)
G157673 NA non-coding downstream 104625 15182135 ~ 15311694 (+)
G157676 LOC107668555,LOC107737499,LOC107570136,LOC107716162,LOC107695834,LOC107564641 non-coding downstream 135817 15213327 ~ 15341005 (+)
G157704 LOC107570193,LOC107668567,LOC107695831,LOC107568457 non-coding downstream 401533 15479043 ~ 15482462 (+)
G157705 NA non-coding downstream 405162 15482672 ~ 15486980 (+)
G157728 LOC107745451,LOC107716070 non-coding downstream 463283 15540793 ~ 15543928 (+)
G157656 megf11,LOC107583869,LOC107672222,LOC107596974,LOC107686294 other upstream 77871 14992350 ~ 14996145 (+)
LOC122328907 mef2d,LOC107741762,LOC107549240,LOC107717782,LOC107597970,LOC107663114,LOC107689865 other upstream 315799 14725910 ~ 14758217 (+)
LOC122328914 szrd1,LOC107673108,LOC107716129,LOC107737539,LOC107687433,LOC105899027 other upstream 359461 14712147 ~ 14714555 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other upstream 387398 14680860 ~ 14686618 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other upstream 437199 14603793 ~ 14636817 (+)
G157620 NA other downstream 223194 15300704 ~ 15304550 (+)
G158152 rps26,RPS26,rps26l,LOC107563646 other downstream 906160 15983670 ~ 16083529 (+)
G158162 dnajc22,LOC107708801,LOC107716089,LOC107563648,LOC107571715,LOC107695753 other downstream 944689 16022199 ~ 16023394 (+)
LOC122328571 kmt2d,LOC107681934,LOC107716211,LOC107695802,LOC107563643 other downstream 1504460 16581970 ~ 16607408 (+)
G158446 atf7a,LOC107563644,LOC107570410,LOC107745462,LOC107681998 other downstream 1543688 16621198 ~ 16664314 (+)

Expression


Co-expression Network