racgap1 (racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350)


Basic Information

Item Value
gene id racgap1
gene name racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17354147 ~ 17361384 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225030.1
AACACAACTCCTCTAGATGCTAACGTTAACAACATATCCGGGTAAACCTGGTTGGAGAAACCGGTTAGGTGCTATTGTCCCTGGAGAAAATATCTTTTCAAGTTATATTTTTGAGTCACGTCGTTTTACAAACAAGGCTAGGCGTCTACACAAATCTGAGGACATGGACACTGCTGTGATCAGTCTTCACAGCATGTTTGATAGCCTGCGGGCACAAGTTGATGTTCTCAATGAAAGCATTGAGCCCCAGTTCATTCAGATGGCTTTGAACTTTGAAGACAGCCGTCGTAAATGGCTGAGACTTGAGCAGGAGCTGAATTCGTGTAAGGAggtgctcaccaaggctgagACGGAGCGAGGAGCTCTGGAGGTCAAGCTCAAACATGCTCGCAACCAAGTAGATGTTGAGATCCGAAGGAGACAGAAAGCTGAGGCTGACTGTGCAAAACTGGACCGTCAGATCCAGCTCATCCGGGAGCTGCTGGTGTCTGAAGGCTCCAGTAACAGCATCCAGTTAAACGAAGAGCAGCGCTCAGCTCTGGCCTTTCTGAATGCCCGTTCTCAGAATCCTGTGAACCTCAACACTAGTCGAAGACTGACCACCATTGATGAATCGGCCTCTATCCTGTCAGACATCAGTTATGATAAAACCGATGATTCCTTGgACTGGGACTCTTCTGCAATCAGGACGGTTCGTCTCAAGAAACGGCAAAAGAGACGCTCCTCCCGAAACCACACAGATGGCCCCCCCGCTGCTGCCAAGAGGTCCCGTTCCACCGGCCGTACCTCGGAGAAAGGTAATGAGTCTCTGGTGGCTAAGACCACCGTGACGGTGCCTGCTGATGGTGGACCCATTGAAGCTGTCACCACAGTGGAGGCAGTTCCTTACTGGACCCGGAGCCGCCGAAAGACTGCTGCTCAGGAGTGGGACACTGCTGACACCGACTCTGTTCAGTCTATGGATGTGTTTAAGCATCCCAGGCAGCCCAATGGAGAGATCAAGGCAGAGCCCAGCACTCCCCAGGGCAACGGAGGTGTCCGCCTGCATGAGTTTGTCTCCAAAACGgTGATCAAGCCGGAGTCTTGTGTGCCATGTGGTAAGAGGATTAAGTTTGGGAAGATCTCTCTGAAGTGCAGGGATTGCCGTGTGGTGGCCCACCCTGAGTGCCGTGAGCGCTGCCCTCTGCCCTGCATTCCTACTATGACTGGGACTCCAGTGAAATTTGAAGAGGGCATCCTAGCAAATTATGTGTCCACCTCCTCTCCAATGATTCCTTCGCTAGTGGTGCACTGCGTTAATGAGATTGAGCAGAGAGGCCTGCATGAGACTGGTCTGTACCGGGTGTCTGGCTCCGATCGAGTGATCAAAGACCTGAAAGAGAAGTTCCTGCGTGGTAAGACCGTTCCCTTGCTCAGCAAGGTGGAAGATGTCCATGCCATCACTGGTCTACTCAAGGACTTCCTGAGGAACCTCAAAGAACCCCTGCTGACCTTCCGCCTCAACCGTGCCTTCATGGATGCTGCTGAGCTGTCCGATGATGACAACAGCATTGCCTTGATGTATCAGAACATCAGTGATCTTCCGCAGCCCAACAGAGACACTCTGGCCTTCCTCGTCATCCATTTGCAGAGGGTGGCCCAGAGCAAAGATACAAGGATGGACATAACCAATCTGGCTCGTGTATTTGGACCCACAATTGTGGGTCATGCCGTGCCTGACCCAGATCCAATGACCATCCTGCAGGACACGAAACGACAGCCAAAAGTGGTCGAGCGTCTCTTAGGTCTGCCTGTGGAGTACTGGAGTCAGTTCATGATCAGCGACAATGACCAGGGTCGCAGTGATCACATGGTCATCGAGAACTCCAATGTCCACGCAACTCCTGATCAGAAAACAAGTATGTTTGGGCCCCTTACGACACCTGACCAGCAGATGAGCAAGACCCCGTCGTCCAGCTCTCTCTCCCAACGCATGAAAAACGCAACTCTCAATGCAATCACTCCAAAGTTTTCTAGCAGGAGCAGAGCGGCAGTCAGCGTCCCTCGCCAGGGGCACTTCTTTGCCTCACCTCTCCTGAAGTAGCCTTGAAGGTCCTCAAGGCtgcgtttttcttttctttgggGAAAAGCTGCAATATTACATTATTCTAATAGCATATTATGTCTGGTTTGTCCGTCAATTAGACCCATATTAACGCTACACTTTTTATCTGTTGAGTTTTCtagtaacattttatattttagtcgcttttaaatgttttaatgcactgttaacattctcATAACCAAAGCGATGGGCTGATACGAGCACTTCCATCAGTTACTAAATATAGTGTTAACGGAATCTACATTAGTTCGGGAGTTCTTTATCAAGAAACCTGAACTTGGATCtagaacaaaaaaaggttatgCCGTATGCAGGATTTGTGTATGGTATAATGCGTATTGCTTGTATATTGTCTTTTTCATGGAACGACCAGCAAAATCTCAGTCTCTTAGAGGGTTCGAGGCTATAGTGACTATCAGGTTTTTCTATGTAGAGtgtaaactgtgtttttaaacgCGGTCAAGCTTAGATTTTACAGCCAGTAGGTTTAATACAGAATTTAAGatgatgctgctgctgatgttaaatttgtttaaattatacgTTTGTTAGAAATACACTGTGCTTTTGAACCCTTTAAGATTTGTGCATAGATGttcaaaacaagaaaattaaGTTAACTATGcaatttaaatgctaaaacacTATTAGTTGTTTTGATTGGGCATTTTGTCTTTCAGCTTCATAATTGCTTTCGATCATAAATGAACATGGCCAGAATTGAGACTTTCACTATGGCATTGATTTATATAGTTTGGGCTCAATTTATTGAATTTTGTACCATatttaaagtagaaaaacaaaaaaaaaacggtgcCCTCTGGGAGAATTGACTGATTTTGAAGGATCTAGTGTACTTTATTGAATTTTATAAAAGATTACACTGATTGGACACTCTTTACTGTATATAATTAGTCATTTTCCTTTCAGTGGAGCAACGTTTTCTGGACCAGTAGTTGTGCAGCACTAAACTGCCAAGCTTTCATTGTTATAAAATGGCAGTTGTTTACTGTGTTAAACATTGAAGCTGATTTATCAACCCGGTTGCTTTTCAGTTTGAGTGGTGTGCCGtttgtaaaatacattcatttattgcaa

Function

symbol description
racgap1 Acts upstream of or within microtubule cytoskeleton organization and mitotic cytokinesis. Is expressed in blastoderm; blastodisc; brain; nervous system; and proliferative region. Orthologous to human RACGAP1 (Rac GTPase activating protein 1).

NR:

description
rac GTPase-activating protein 1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K16733 RACGAP1, Tum; Rac GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225030.1 True 3205 mRNA 0.46 17 17354147 17361384

Neighbor

gene id symbol gene type direction distance location
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding downstream 3199 17344102 ~ 17350948 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding downstream 23260 17316628 ~ 17330887 (-)
tfcp2 tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516 coding downstream 38757 17303211 ~ 17315390 (-)
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding downstream 51582 17294178 ~ 17302565 (-)
itga5 itga5,LOC107671874,LOC107697976,LOC107594039 coding downstream 95983 17214599 ~ 17258164 (-)
tmed4 tmed4,LOC107594055,LOC107671834,LOC107715031,LOC107598625,LOC107697966,LOC107707037 coding upstream 72348 17433732 ~ 17438013 (-)
LOC122328974 agmat,LOC107714919,LOC102790280 coding upstream 412021 17773405 ~ 17777920 (-)
pink1 pink1,LOC107714979,LOC107697909,LOC107751829 coding upstream 417090 17778474 ~ 17784124 (-)
LOC122328575 LOC107714980,LOC107664226,LOC107563140,LOC107664227,LOC107714944 coding upstream 423331 17784715 ~ 17786242 (-)
LOC122328417 LOC107563141,LOC107563138,LOC107664227,LOC107751839,LOC107599502,LOC107714980,LOC107664226,LOC107563140 coding upstream 426213 17787597 ~ 17788930 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding downstream 15228 17311328 ~ 17338919 (-)
G158605 NA non-coding downstream 62604 17289971 ~ 17291543 (-)
G158591 NA non-coding downstream 128578 17152825 ~ 17225569 (-)
G158587 NA non-coding downstream 271463 17082207 ~ 17082684 (-)
G158484 NA non-coding downstream 625804 16728101 ~ 16728343 (-)
G158628 NA non-coding upstream 21958 17383342 ~ 17386554 (-)
G158632 NA non-coding upstream 32637 17394021 ~ 17395422 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 385146 17746530 ~ 17748502 (-)
LOC122328377 NA non-coding upstream 438458 17799842 ~ 17844102 (-)
G158774 NA non-coding upstream 582541 17943925 ~ 17944160 (-)
G158609 NA other downstream 10762 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 169762 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 995442 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1110752 16240810 ~ 16243395 (-)
G158288 LOC107708856,LOC107570569,LOC107716212,LOC107681953,LOC107695729 other downstream 1184313 16143833 ~ 16169834 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other upstream 52319 17413703 ~ 17422517 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 684542 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 870259 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 934662 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 980950 18342334 ~ 18350347 (-)

Expression


Co-expression Network