tmed4 (tmed4,LOC107594055,LOC107671834,LOC107715031,LOC107598625,LOC107697966,LOC107707037)


Basic Information

Item Value
gene id tmed4
gene name tmed4,LOC107594055,LOC107671834,LOC107715031,LOC107598625,LOC107697966,LOC107707037
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17433732 ~ 17438013 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225107.1
TCGAGCTCAAGCGACTCTGAAATCGATTCGCATCCCTGGATTGAGTGAGGGGTGATTTGGATTGAGATGAAGGCGGCGGTGTTTTGTACCGGGTTTACGCTTCTGTTTGCTTGGCTTTCTCCAAACCAAGCCCTTTACTTTCACATCGGAGAGACGgagaagaaatgttttatagAAGAAATACCCGACGAAACCATGGTGATCGggagaTACAGAACACAGCTGTGGGACAAACAGGCTGCCTCTTTTCTCCCATCCACCCCCGGTTTAGGCATGCACGTGGAAATCAAAGATCCTGATACTAAGATCATCCTGTCCCGTCAGTACGGCTCAGACGGCCGCTTCACCTTCACGTCCCACACACCAGGCGAGCATCAAATCTGCCTCCACTCCAACTCCACCAAGATGGCGCTGTTTGCCGGGGGAAAGCTGAGAGTACACTTGGACATTCAGGTTGGTGAACACACCAACAACTACCCAGAGATTGCAGCCAAAGACAAGCTGACCGAGCTGCAGCTGAGGGTCCGACAGCTCCTGGACCAGGTGGAACAGAtccagaaagagcagaactACCAGCGGTACCGCGAGGAGCGTTTCCGTATGACGAGCGAGAGCACGAACCAGCGCGTCCTGTGGTGGTCTATCGCTCAGaccatcatcctcatcatcaccGGCATCTGGCAAATGAGACATCTCAAGAGCTTCTTTGAGGCCAAAAAGCTGGTGTGAAGATCAGACAGAACTACAGAGACAATAACTCAAGTAACATTCATTTCCGTCGTGGTTTAAGCATGGAAatacttcttcttttttttttttttattcaatttggTACAATTTTATCTAGAGCAGATAAATTCAGACACGATGAGCTTAAACGGGCAGAATAATAACAACCCTTAATTCTGCTGTATGACTGATAACCCTTTATTATACACGTCTCTCATCTAGAGCGTTGGTCGTTTTACTAAAACGCGAGATAGGAAGCTGTTTTGCCTTTAAGGTGATGATCATACTGCTACGGTCACGTCAAACTTCAAGGTTGTATTGCCGATAAATGTGAAGAATCAAGCCAGCTaatcattttcagcatttttcaacgtttttaatgtgtatatattgaGGTATTTAAGATTTtgacaaatttgtggctttgtTTTCATATTCTGTGCGACTCGGGCTCTCAAATACATTCGATGTTGGTGATTTTGAGGGGGATATTATTCAAGCTAACTGACTATAGCTTGCAGAGTAGCTGCTtagaccaaaaacaaaaatacatgttttgaGAATTTTCTTTCTTGGTGgtttacaaaatatgttttttttgttctttttatgctttatttattaactgcATTGACCACATTTAATCACAGGAATGTATGTAACGAAAACTTTCTGGGGTTTTGTTCagtttgaaaaatatatgttgtttatagGATCTTTGGAAAATTTTGTACTGGCTTCTTACAAGTaccaatttataaaaatgctggTTTGCATGATGCACAAATAATGCGACAACTTGAAGGTTATTTCTAGGTTAACACAGCTGTATTCTCAAGTGTCACTCAAGCTTTGTAATAAACTGTTCATCAGTGTGCATGCAGATGCTTTAACTGTACACTTGGTACTCAGTCTTTACATTGTTTGACACATCGTTCATAAACACTGCTTCCGTGTCTATATTTTAGTTGTTGCTTTGAATTAAATgggttttaaaatga

Function

symbol description
tmed4 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED4 (transmembrane p24 trafficking protein 4).

NR:

description
transmembrane emp24 domain-containing protein 4-like isoform X2

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20346 TMED4_9_11; p24 family protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225107.1 True 1730 mRNA 0.42 5 17433732 17438013

Neighbor

gene id symbol gene type direction distance location
racgap1 racgap1,LOC107671897,LOC107594001,LOC107697971,LOC107756422,LOC107714933,LOC107599350 coding downstream 72348 17354147 ~ 17361384 (-)
bin2a LOC107671903,LOC107715035,LOC107594002,LOC107697868,LOC107598577,LOC107756358 coding downstream 82784 17344102 ~ 17350948 (-)
pou6f1 pou6f1,LOC107671889,LOC107715037,LOC107598516,LOC107756417,LOC107697973 coding downstream 102845 17316628 ~ 17330887 (-)
tfcp2 tfcp2,LOC107671887,LOC107715039,LOC107756415,LOC106572516 coding downstream 118342 17303211 ~ 17315390 (-)
csrnp2 csrnp2,LOC107671888,LOC107715040,LOC107594006,LOC107598537,LOC107756414 coding downstream 131167 17294178 ~ 17302565 (-)
LOC122328974 agmat,LOC107714919,LOC102790280 coding upstream 335392 17773405 ~ 17777920 (-)
pink1 pink1,LOC107714979,LOC107697909,LOC107751829 coding upstream 340461 17778474 ~ 17784124 (-)
LOC122328575 LOC107714980,LOC107664226,LOC107563140,LOC107664227,LOC107714944 coding upstream 346702 17784715 ~ 17786242 (-)
LOC122328417 LOC107563141,LOC107563138,LOC107664227,LOC107751839,LOC107599502,LOC107714980,LOC107664226,LOC107563140 coding upstream 349584 17787597 ~ 17788930 (-)
LOC122328416 LOC107599143,LOC107697854,LOC107751854,LOC107714945,LOC107563142,LOC107664148 coding upstream 350967 17788980 ~ 17796430 (-)
G158632 NA non-coding downstream 38310 17394021 ~ 17395422 (-)
G158628 NA non-coding downstream 47178 17383342 ~ 17386554 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding downstream 94813 17311328 ~ 17338919 (-)
G158605 NA non-coding downstream 142189 17289971 ~ 17291543 (-)
G158591 NA non-coding downstream 208163 17152825 ~ 17225569 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding upstream 308517 17746530 ~ 17748502 (-)
LOC122328377 NA non-coding upstream 361829 17799842 ~ 17844102 (-)
G158774 NA non-coding upstream 505912 17943925 ~ 17944160 (-)
G158887 NA non-coding upstream 561820 17999833 ~ 18001690 (-)
G158892 NA non-coding upstream 574113 18012126 ~ 18015877 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 11215 17413703 ~ 17422517 (-)
G158609 NA other downstream 90347 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 249347 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1075027 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1190337 16240810 ~ 16243395 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 607913 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 793630 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 858033 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 904321 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 1309378 18747391 ~ 18754712 (-)

Expression


Co-expression Network