tspan31 (tspan31,tsn31,LOC107599072,LOC107593953)


Basic Information

Item Value
gene id tspan31
gene name tspan31,tsn31,LOC107599072,LOC107593953
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18065270 ~ 18070963 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225144.1
AGATTCGAACGTCGCCACCTCTCGCCACAAGAGAAGAAGAACGGCGTCTAGCCTACTCACAGCAGCGAAAACAACATCTGTAGCACATCGTTTCGTCTCACCGGTAAATGCCTGAAGAGTCAACATGGTTTGCGGAGGATTTACGTGCTCGAAAAACGCCCTCTGTTCGCTAAATGTAGTTTATATGCTGGTGGGTCTCCTGTTGATTGTGGTAGCAGCATGGGGAAAAGGCTTTGGCATTGTCTCCAGCATCCACATCATCGGCGGCGTCATTGCCGTGGGCTTCTTTCTACTGCTGATCGCCATTGTAGGACTCATTGGAGCCGTCCATCATCACCAAGTCATGCTTTTCTTTTACATGGTCATTCTCTTCATTGTGTTCCTCTTCCAGTTTGGAGTTTCCTGTTCTTGTCTGGCCATGAACCAGGGTCAACAGGAGAAGCTGCTGAACTCATCCTGGGGAATAATGAGTAACGACACAAGAATCAGCCTTGAGAAGAAGCTGGACTGCTGTGGCCTGTTCAACAATTCGCAGAGCCAGGCAGTGTTTGCAGGAGACTTACCCCTCTGCGATTCTCCATGCCTAAAAAATAAGCTCTGCCTCACTTGTGGTGAAAAGATGCTCCAACATTCATCAGAGGCTTTGAAGATCCTCGGAGGAGTCGGCCTCTTTTTCAGCTTTACAGAGATCTTAGGAGTTTGGCTGGCCATGCGCTACAGGAACCAAAAGGACCCGAGAGCGAACCCCAGTGCATTCTTATAGTCTCTCAGACCGTCTGTCCTGAACTATGTTTAGTGTAGTCCAGCTATTCCAGTTCCCCTTTGCACAGGTCGAATGGAGCGCACCAAGAgacatttaaagcattaaacGCAGAACACGACCACTGATCCCCGCAACAAACTCCCATCTACACACCTGGATCACACTAGATACGAACGCACATGCAAACACATCTATTTTAGCGATAGATCTGACCCATTTTCCACACAAGGTCTGCAGAGGGCTAATTTAAACCAGCAGGAGGAGGTATCATGTATGATAGGATGCTCGTTCCGGCACTTCCCCCATCCTTGATGTGAGAAACTCTTCCTGTTTTCTGTATGCAAACCGAAAATCTGCAATGTAAAGTCATCGATGTCTGCATGTTCATAGCCTCAGTTTCTCGTGACACACTCACTTATGTACACACAACCAGGTATGATGTGCCCAAATAGTCCCTGTAGTTTCAGTGTAACGGAAAGTTAACCCCGCATAAACTATGGTAATGTTTAGTATCGGTTAGTCAAGGTGAACTACTCTGTCACGTATCTCCCAGGAAAATCACGTCAGGTGCACTCCGAACGAGCGCAGACCTGAAACATGCCTGTGTTTTGTGCAATGCTATATGAAGTCCGTCTCGATGAGGTGACTGGTCCGGCCTATGGGACATTAGTTTAGGAATTAGACGTAGAGcgtgaatatttaaaaacatttgtgtaacTGAGCCATGTGAATGGGAGGATTTCCCCCGCCGATGGACTGCTGTTGTACATAGTCTTTACCGCGACAGGGTTGATGTTCAGCGAATCTTTTCCATCCTTATTTAAACCACAGAGATCCTCCCGTCTCAGCCGGGTCTCGCTATTCTCACTGGACTTCTTAAGTTCTCCATTTCCTCTAAAGCTTAGTATTACTCAtggattttgtattttaatatcttatgatttttttttttttttttttttttttttgtgtgtgtgtggatgtttgTTGAAATAATCTCGGTGTGCCATTTACTCAGTTGGTTTAAACCAGGTACTCATGCACTAACTTGCGGTTTTTATCATTTGCAATCATGCATCGCTTCTTTTCAGCTATTTTATAAGTACTAGTACTAACGGCACCAGGTCCATATTTTTAGCACTGAATACCGGGCCATTTCAGTTAAATccttcttattttgtgttttgccaAACCtcttggttttttttgtcattgcgcttatgatttttttttttcttcttgttttgtgCTAATAGTGTTAAGTTGCCATTAAAGTGTGAGTTTTTTGCAATGTTGATCATTGTTATTGTAGAGGATAGATCATTTGTAATGACCTTTtgtgcacacacatatgttaATTCCATGTTCCCGTGTTATGTgttaatttgtttattcatattaatagtGGAACATACAGGCTAATACTCACAGTCTTAACTGCTTTAGTTTCTGCCCCACGTGACTGAGAAAATGGGAACACTGAACCATCACTCAGTACAGCTTAAATGTGTTCTGCTTCACTTGGTCATGGTATTATGAGTGTGTTTCACTGATGGATTTTGAAGAGGTGAAATCAATGTCTGTGCTATAGTAGTTATTTATTGCCGCAGTACCCGACTCGGTGAGCTGTAAGCACCATTTTCCCTGGATTTGCCTTGTATTTTTGAAACTGACTTTTCCAATTAAATATTCTTAGATCAATA

Function

symbol description
tspan31 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TSPAN31 (tetraspanin 31).

NR:

description
tetraspanin-31-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K17356 TSPAN13_31; tetraspanin-13/31

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225144.1 True 2466 mRNA 0.43 6 18065270 18070963

Neighbor

gene id symbol gene type direction distance location
LOC122329235 LOC107714952,LOC107664261,LOC107594045,LOC107599127,LOC107706987,LOC107697913 coding downstream 127691 17935574 ~ 17937579 (-)
LOC122329192 cptp,LOC107706969,LOC107697856,LOC107664144,LOC107599683,LOC107594044 coding downstream 139066 17924639 ~ 17926204 (-)
ubxn10 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 coding downstream 140767 17922587 ~ 17924503 (-)
vwa5b1 vwa5b1,LOC107706959,LOC107714920,LOC107664114,LOC107563127 coding downstream 150733 17879067 ~ 17914537 (-)
fam43b fam43b,LOC107563144,LOC107714947,LOC107664143,LOC107697855,LOC107577211 coding downstream 228298 17834843 ~ 17836972 (-)
gpr182 gpr182,LOC107664254,LOC107697920,LOC107593955,LOC107706991,LOC107599064 coding upstream 31348 18102311 ~ 18105120 (-)
pip4k2ca pip4k2ca,LOC107714989,LOC107598997,LOC107664235,LOC107697923,LOC107593957 coding upstream 36922 18107885 ~ 18116326 (-)
igfbp6b igfbp6b,LOC107714992,LOC107664167,LOC107593959,LOC107697925,LOC107599019,LOC105912701 coding upstream 49332 18120295 ~ 18123704 (-)
lima1a LOC107714990,LOC107664165,LOC107593956,LOC107706995,LOC107697921 coding upstream 91497 18162460 ~ 18177490 (-)
copz1 copz1,LOC107664248 coding upstream 143615 18214578 ~ 18220380 (-)
G158882 NA non-coding downstream 21794 18041910 ~ 18043476 (-)
G158892 NA non-coding downstream 49393 18012126 ~ 18015877 (-)
G158887 NA non-coding downstream 63580 17999833 ~ 18001690 (-)
G158774 NA non-coding downstream 121110 17943925 ~ 17944160 (-)
LOC122328377 NA non-coding downstream 221168 17799842 ~ 17844102 (-)
G158947 NA non-coding upstream 122007 18192970 ~ 18193557 (-)
G158946 NA non-coding upstream 123289 18194252 ~ 18194524 (-)
G158948 LOC107599665,LOC107664257,LOC107714993,LOC107697859,LOC107706997 non-coding upstream 124436 18195399 ~ 18196369 (-)
G158949 NA non-coding upstream 129804 18200767 ~ 18200966 (-)
G158950 NA non-coding upstream 132073 18203036 ~ 18203452 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 6531 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 642753 17413703 ~ 17422517 (-)
G158609 NA other downstream 721885 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 880885 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1706565 16355369 ~ 16358705 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 160680 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 225083 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 271371 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 676428 18747391 ~ 18754712 (-)

Expression


Co-expression Network