hoxc13a (hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009)


Basic Information

Item Value
gene id hoxc13a
gene name hoxc13a,hoxc13,LOC107715003,LOC107593972,LOC107707009
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18400997 ~ 18403756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225280.1
ATGACGACTTCGCTGGTCCTGCATCCACGCTGGGCGGACACCTTGATGTACGTGTATGAAAAAAGCCCGaatgaaaataatcagaataaaagCCAAATTATGGAAGGATTGAGCGGGAATTGCCCTGCGACTCATTGCAGGGAACTGATCTCACACCCCGCGCTGGGGCGGCATTCCGGCACCATAGCGACTCACCAGGGATCCGTGTACTCGGATATATCTTCCCCAGAAACCGGGCGACAGTGCCCCGCTCCACAGACGTCATCTAGCGCCTCTCTGAGTTACGGCTACCCCTTTGGAAACCCCTACTACGGTTGCAGATTGTCTCACTCGCACAACGTGAACTTGCAGCAGAAACCGTGTTCGTACCATCCCGCAGAAAAATACGCCGAGACGAGCAGCGCCTTGCCCGCGGAGGAGCTCTCCAGCAGGGCGAAAGAGTTCGCGTTCTACCCGAGTTTTGCCAGCTCGTACCAGGCGGTTCCAGGATATCTAGACATGTCGGTGGTCCCCAGTATTAGCGCGCATCCCGAGCCACGTCACGATGCATTGATCCCCATGGAGGGCTATCAACACTGGGCTCTGTCGAACGGCTGGGATGGGCAGGTGTACTGTTCAAAGGAGCAAACGCAGTCTTCTCATCTTTGGAAGTCTCCGTTTCCAGatgttGTTCCGTTGCAGCCAGAAGTCAGCAGTTATCGTCGAGGGCGCAAAAAGCGCGTTCCCTACACCAAGATACAACTAAAGGAACTGGAAAAAGAGTACGCAGCGAGCAAGTTTATCACCAAAGACAAGAGACGACGCATCTCCGCGACGACCAACCTCTCAGAACGCCAAGTTACTATTTGGTTCCAGAACCGCAGAGTGAAGGAGAAGAAGTTTGTCAGTAAATCCAAGACTAATAATCACATGCATACTTGATGCATGTTtcgtactttttttttcttc

Function

symbol description
hoxc13a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within fin regeneration. Predicted to be located in nucleus. Is expressed in pronephric duct; pronephros; and tail bud. Human ortholog(s) of this gene implicated in ectodermal dysplasia 9. Orthologous to human HOXC13 (homeobox C13).
hoxc13 Enables DNA-binding transcription factor activity; DNA-binding transcription factor binding activity; and transcription cis-regulatory region binding activity. Involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in ectodermal dysplasia 9.

NR:

description
homeobox protein Hox-C13a

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0031101 fin regeneration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09298 HOX_13; homeobox protein HoxA/C/D13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225280.1 True 948 mRNA 0.52 2 18400997 18403756

Neighbor

gene id symbol gene type direction distance location
hoxc12a hoxc12a,LOC107664239,LOC107593973,LOC107715004,LOC107697936,LOC107707010 coding downstream 7478 18391950 ~ 18393519 (-)
hoxc11a hoxc11a,LOC107593971,LOC107706974,LOC107715002,LOC107664237,LOC107697935,LOC107598846 coding downstream 18067 18379954 ~ 18382930 (-)
hoxc10a hoxc10a,LOC107593968,LOC107664221,LOC107714961,LOC107706973,LOC107598838,LOC107697934 coding downstream 24834 18356198 ~ 18376163 (-)
hoxc9a hoxc9a,LOC107593969,LOC107714960,LOC107697937,LOC107707007,LOC107598864 coding downstream 34757 18361054 ~ 18366240 (-)
hoxc8a hoxc8a,hoxc8,LOC107598875,LOC107697938,LOC107593970,LOC107664222,LOC107707008,LOC108433404 coding downstream 42616 18355661 ~ 18358381 (-)
rarga rarga,rarg,LOC107715005,LOC107707012,LOC107593976,LOC107697942,LOC107664174 coding upstream 53169 18456925 ~ 18507741 (-)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding upstream 131956 18535712 ~ 18545493 (-)
LOC122328645 tuba1b,tuba1c,LOC108255233,LOC107707017 coding upstream 160306 18564062 ~ 18570774 (-)
LOC122328643 tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365 coding upstream 164416 18568172 ~ 18570838 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding upstream 175336 18579092 ~ 18584032 (-)
G158955 NA non-coding downstream 154170 18244923 ~ 18246827 (-)
G158953 LOC107714996 non-coding downstream 162465 18237897 ~ 18238532 (-)
G158952 NA non-coding downstream 194539 18206143 ~ 18206458 (-)
G158950 NA non-coding downstream 197545 18203036 ~ 18203452 (-)
G158949 NA non-coding downstream 200031 18200767 ~ 18200966 (-)
LOC122328626 NA non-coding upstream 18103 18421859 ~ 18456506 (-)
G158984 NA non-coding upstream 36894 18440650 ~ 18442479 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding upstream 155664 18559420 ~ 18563142 (-)
LOC122329081 NA non-coding upstream 209920 18613676 ~ 18615145 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 238506 18642262 ~ 18644688 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 50650 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 98422 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 165461 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 342258 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 978480 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 343635 18747391 ~ 18754712 (-)

Expression


Co-expression Network