acp1 (acp1,LOC107707021,LOC107715013)


Basic Information

Item Value
gene id acp1
gene name acp1,LOC107707021,LOC107715013
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 18624388 ~ 18637498 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225284.1
ATTTGGAGCAGGCGGTAACTTGGGCAACCTTCAGCGGTGGCGCGGGGACCTATATTAGTGACCAATATGGCGACTCCCGGTGGAAGGTCGGTGTTATTCGTGTGCTTGGGGAATATCTGCAGATCCCCAATCGCTGAGGCTGTTTTCCAGAAAATGGCCAAAGACACTGGGGTGGTGGACAAGtggGTTATAGACTCTGGTGCCACCTCAGATTGGAATACTGGCAGCTCTCCTGACGCCCGTGGTCTGGCCTGCCTCAGGAAACATGGCATAGAGACAGATCACAGGGCACGACAGGTCACCAAAGACGACTTCATGACTTTCGATCACATCCTCTGCATGGACGAAAGCAATTTGAGAGATCTGAACAAGAAGGCAAGCACCGTGAAAAACAGCAAAGCCAAGATCGAGCTGCTCGGCTCCTACGATCCTGAAAAACAGCTTATTATCCAAGACCCATACTATGGGAGTGATAAAGACTTTGAGACGGTGTATGAACAGTGTGTGAGATGTTGCAAAGCCTTCCTGGAGCAGCACTcataacagacacacacacacacacacacacaagcacacacacacacactgcgacCATCTCCTGAAACCTGCTACGCCTCATCATAAGATGCTCGAACGTAAATATCCATTTGAAATAAGTGTCTTCATAAGCAAAGCACTCAAACCAAACAATAACAGCGTAGAGAGAAGCactttttgtctttaattgtaaaatacGTCGTGATGAAATGTCATATGATGCTTGTTTGAGCAACTGTAAACTGCTTTTGTTGACCATGCTCTCTGAAGAGAGTAAATTCACCAAAATAAACCAGCTGAAAATGCTAAAATCA
>XM_043225285.1
ATTTGGAGCAGGCGGTAACTTGGGCAACCTTCAGCGGTGGCGCGGGGACCTATATTAGTGACCAATATGGCGACTCCCGGTGGAAGGTCGGTGTTATTCGTGTGCTTGGGGAATATCTGCAGATCCCCAATCGCTGAGGCTGTTTTCCAGAAAATGGCCAAAGACACTGGGGTGGTGGACAAGtgGAGAATAGACAGTGCCGCCACATCCACCTATGAGATCGGAAACCCCCCGGATCACCGCGGCCAGGCCTGCATGAAGCGACACGGCGTGTCTATGAGGCACGTGGCGCGGCAGGTCACCAAAGACGACTTCATGACTTTCGATCACATCCTCTGCATGGACGAAAGCAATTTGAGAGATCTGAACAAGAAGGCAAGCACCGTGAAAAACAGCAAAGCCAAGATCGAGCTGCTCGGCTCCTACGATCCTGAAAAACAGCTTATTATCCAAGACCCATACTATGGGAGTGATAAAGACTTTGAGACGGTGTATGAACAGTGTGTGAGATGTTGCAAAGCCTTCCTGGAGCAGCACTcataacagacacacacacacacacacacacaagcacacacacacacactgcgacCATCTCCTGAAACCTGCTACGCCTCATCATAAGATGCTCGAACGTAAATATCCATTTGAAATAAGTGTCTTCATAAGCAAAGCACTCAAACCAAACAATAACAGCGTAGAGAGAAGCactttttgtctttaattgtaaaatacGTCGTGATGAAATGTCATATGATGCTTGTTTGAGCAACTGTAAACTGCTTTTGTTGACCATGCTCTCTGAAGAGAGTAAATTCACCAAAATAAACCAGCTGAAAATGCTAAAATCA

Function

symbol description
acp1 Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within pronephros development. Predicted to be located in cytoplasm. Is expressed in gut and liver. Human ortholog(s) of this gene implicated in several diseases, including attention deficit hyperactivity disorder; conduct disorder; diabetes mellitus (multiple); diabetic retinopathy; and obesity. Orthologous to human ACP1 (acid phosphatase 1).

NR:

description
low molecular weight phosphotyrosine protein phosphatase isoform X1

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003993 acid phosphatase activity molecular_function
GO:0004726 non-membrane spanning protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K14394 ACP1; low molecular weight phosphotyrosine protein phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225284.1 True 851 mRNA 0.46 6 18624388 18637498
XM_043225285.1 False 851 mRNA 0.47 6 18624388 18637498

Neighbor

gene id symbol gene type direction distance location
ccnt1 LOC107697949,LOC107593984,LOC107707019,LOC107715012,LOC107664179 coding downstream 31534 18585124 ~ 18592854 (-)
pmelb LOC107664180,LOC107593983,LOC107715011 coding downstream 40356 18579092 ~ 18584032 (-)
LOC122328643 tuba1a,LOC108255233,LOC108275946,LOC107664173,LOC107390365 coding downstream 53550 18568172 ~ 18570838 (-)
LOC122328645 tuba1b,tuba1c,LOC108255233,LOC107707017 coding downstream 53614 18564062 ~ 18570774 (-)
gdap1l1 gdap1l1,LOC107594051,LOC107664149,LOC107707014,LOC107599436,LOC107697944,LOC108433413 coding downstream 78895 18535712 ~ 18545493 (-)
si:ch211-225h24.2 si:ch211-225h24.2,LOC107715017,LOC107664242,LOC107707023,LOC107697952,LOC107598767,LOC107594029 coding upstream 15954 18653452 ~ 18666191 (-)
si:ch211-236h17.3 si:ch211-236h17.3,LOC107715024,LOC107664194,LOC107593992,LOC107707028,LOC107598729,LOC107697955 coding upstream 177259 18814757 ~ 18829293 (-)
LOC122328577 LOC107715025,LOC107671876,LOC107599375,LOC108425505,LOC106572368,LOC105022778 coding upstream 348454 18985952 ~ 19059410 (-)
LOC122329081 NA non-coding downstream 9243 18613676 ~ 18615145 (-)
G158980 LOC107707015,LOC107697945,LOC107593978,LOC107598797,LOC107715007,LOC107664110 non-coding downstream 61246 18559420 ~ 18563142 (-)
LOC122328626 NA non-coding downstream 167882 18421859 ~ 18456506 (-)
G158984 NA non-coding downstream 181909 18440650 ~ 18442479 (-)
G158955 NA non-coding downstream 377561 18244923 ~ 18246827 (-)
G159048 LOC107714930,LOC107664105,LOC107593987 non-coding upstream 4764 18642262 ~ 18644688 (-)
G159052 NA non-coding upstream 10589 18648087 ~ 18648625 (-)
G159054 NA non-coding upstream 26904 18664402 ~ 18731816 (-)
G159055 NA non-coding upstream 33017 18670515 ~ 18672766 (-)
G159063 NA non-coding upstream 42038 18679536 ~ 18680426 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other downstream 274041 18342334 ~ 18350347 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other downstream 321813 18296046 ~ 18302575 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other downstream 388852 18231643 ~ 18235536 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other downstream 565649 18045926 ~ 18058739 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 1201871 17413703 ~ 17422517 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 109893 18747391 ~ 18754712 (-)

Expression


Co-expression Network