LOC122329192 (cptp,LOC107706969,LOC107697856,LOC107664144,LOC107599683,LOC107594044)


Basic Information

Item Value
gene id LOC122329192
gene name cptp,LOC107706969,LOC107697856,LOC107664144,LOC107599683,LOC107594044
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 17924639 ~ 17926204 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225389.1
TTGCTTAAAGAACACAGGAAAGTCCCGGAACAGATGATTAAGAGCGAAGTATTTACAGCGATTAAAGAACGCATaagacacttttatttaaaattaatatatacgtttttttgttaatttattgtgCTAATTCGTCCACCGATTTTATTTCGTGGTGATTAGAAAATAGAAAGAACAGACATGGCAGATACATTCAGTCTTCAAAGGGTTTTGGAAACATTCAGATCAAGTCTGAGTGAGAATAAGGaggtttacattaaatattatatagcaGGATGGCAAGAGTTGGTCTCCTTTATGAATAGTTTAGGGAACGTGTTTTCCTTCATCTCCAAGGATGTGGTCAGCAAAATCCAGATCTTAGAGAACTTCCTTTCAGGAGAAAATGGGTCCCATTACGTCACCATCCAGTCCATGGTGAAGTACGAGCTGGAAAATGACCTGGTGGACCTCACTAAAAGAGGCAGCCACCCAGAATCCGGCTGCCGCACTCTTCTGAGGCTCCACCGGGCTCTGCGCTGGCTGGAGTCGTTCCTGGAGAGGCTTCGAACCAGCGCCGATGACAGCAAGACCTCGGTCATGTGTTCTGACGCCTATAACGAGTCTCTGGCTCAGCACCATCCCTGGCTCATCCGGAAAGCCGTCGGCGTGGCGTTCTGTGCCCTTCCGGGGCGCGACACGTTCTTTGATGTGATGAATGCGGGTGATCACACGCAGGTGGTTGCTCTGTTGGGAGAGTCTTTGCCTCTCATTGCTGAAGTCTACCAGATCACAGAAGACTTGTATGCGAAAAACAACCTCCTGGAGTTACCGTAGAGGGGGactgatatatattttactcaATACACTAATAGTCTTTGTGGCACatactcatttatttacttatttgacTGTCTTACCTGTTAGATAACCAAAGGGACATGCAATATGTggatttaatgcacattttaggCAGGGTTCTGCTCATTTAAGCTATCAACTACATAACACCAAGTGGGCATTAAATGCTGGATGTACTTCACTATATTCGAGCTTAGGGAACaataaaaaagccatttaaagGCACAGGGCGTGTATGAAGTATGGAAGTActgtatatttgaatatataggTCATTTTTTCCTCCTAATTATTTATTGGAAATAATTTTACTTGAATTTGTGTGGAATGTGCATCATACATCTGCAGCTTTGCTGAAACTACAAAGGGAGAAATGTTgtgaatgtataaataattaatatgtaatgcaataattaaatataatattgtgagAAATGTGCGTTATGTAAGCTG

Function

symbol description
cptp Predicted to enable ceramide 1-phosphate binding activity and ceramide 1-phosphate transfer activity. Predicted to be involved in several processes, including lipid transport; negative regulation of NLRP3 inflammasome complex assembly; and negative regulation of interleukin-1 beta production. Predicted to act upstream of or within lipid transport. Predicted to be located in Golgi apparatus; bounding membrane of organelle; and plasma membrane. Predicted to be active in cytosol and membrane. Orthologous to human CPTP (ceramide-1-phosphate transfer protein).

NR:

description
PREDICTED: ceramide-1-phosphate transfer protein

GO:

id name namespace
GO:0046836 glycolipid transport biological_process
GO:1902389 ceramide 1-phosphate transport biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005640 nuclear outer membrane cellular_component
GO:0010008 endosome membrane cellular_component
GO:0017089 glycolipid transfer activity molecular_function
GO:1902387 ceramide 1-phosphate binding molecular_function
GO:1902388 ceramide 1-phosphate transfer activity molecular_function
GO:0051861 glycolipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225389.1 True 1293 mRNA 0.41 2 17924639 17926204

Neighbor

gene id symbol gene type direction distance location
ubxn10 LOC107714950,LOC107664163,LOC107706981,LOC107563148,LOC107697872,LOC107599688 coding downstream 136 17922587 ~ 17924503 (-)
vwa5b1 vwa5b1,LOC107706959,LOC107714920,LOC107664114,LOC107563127 coding downstream 10102 17879067 ~ 17914537 (-)
fam43b fam43b,LOC107563144,LOC107714947,LOC107664143,LOC107697855,LOC107577211 coding downstream 87667 17834843 ~ 17836972 (-)
LOC122328416 LOC107599143,LOC107697854,LOC107751854,LOC107714945,LOC107563142,LOC107664148 coding downstream 128209 17788980 ~ 17796430 (-)
LOC122328417 LOC107563141,LOC107563138,LOC107664227,LOC107751839,LOC107599502,LOC107714980,LOC107664226,LOC107563140 coding downstream 135709 17787597 ~ 17788930 (-)
LOC122329235 LOC107714952,LOC107664261,LOC107594045,LOC107599127,LOC107706987,LOC107697913 coding upstream 9370 17935574 ~ 17937579 (-)
tspan31 tspan31,tsn31,LOC107599072,LOC107593953 coding upstream 139066 18065270 ~ 18070963 (-)
gpr182 gpr182,LOC107664254,LOC107697920,LOC107593955,LOC107706991,LOC107599064 coding upstream 176107 18102311 ~ 18105120 (-)
pip4k2ca pip4k2ca,LOC107714989,LOC107598997,LOC107664235,LOC107697923,LOC107593957 coding upstream 181681 18107885 ~ 18116326 (-)
igfbp6b igfbp6b,LOC107714992,LOC107664167,LOC107593959,LOC107697925,LOC107599019,LOC105912701 coding upstream 194091 18120295 ~ 18123704 (-)
LOC122328377 NA non-coding downstream 80537 17799842 ~ 17844102 (-)
G158706 LOC107599375,LOC107715025,LOC107671876,LOC107594031,LOC104946192 non-coding downstream 176137 17746530 ~ 17748502 (-)
G158632 NA non-coding downstream 529217 17394021 ~ 17395422 (-)
G158628 NA non-coding downstream 538085 17383342 ~ 17386554 (-)
G158608 dazap2,LOC107715036,LOC107594003,LOC107671873,LOC107756418,LOC107598568 non-coding downstream 585720 17311328 ~ 17338919 (-)
G158774 NA non-coding upstream 17721 17943925 ~ 17944160 (-)
G158887 NA non-coding upstream 73629 17999833 ~ 18001690 (-)
G158892 NA non-coding upstream 85922 18012126 ~ 18015877 (-)
G158882 NA non-coding upstream 115706 18041910 ~ 18043476 (-)
G158947 NA non-coding upstream 266766 18192970 ~ 18193557 (-)
coq10a si:dkey-190g6.2,LOC107671896,LOC107715030,LOC107598614,LOC107697969,LOC102210977,LOC108425511,LOC102797363 other downstream 502122 17413703 ~ 17422517 (-)
G158609 NA other downstream 581254 17339267 ~ 17343385 (-)
slc48a1a slc48a1a,LOC107671836,LOC107598487,LOC107594008,LOC107756371,LOC107697869,LOC107757747 other downstream 740254 17176625 ~ 17184385 (-)
G158336 LOC107716221,LOC107570608,LOC107586536,LOC106567035 other downstream 1565934 16355369 ~ 16358705 (-)
tac3a LOC107708854,LOC107571761,LOC107681951,LOC107586540,LOC107695797 other downstream 1681244 16240810 ~ 16243395 (-)
march9 march9,LOC107593952,LOC107664138,LOC107714987,LOC107706970,LOC107599679,LOC107697857,LOC107088728,LOC108433385,LOC103130462,LOC105930772 other upstream 119722 18045926 ~ 18058739 (-)
hnrnpa1b hnrnpa1b,LOC107664187,LOC107714994,LOC107707002 other upstream 305439 18231643 ~ 18235536 (-)
hoxc1a LOC107598919,LOC107707004,LOC107697929,LOC107594049,LOC107664160,LOC107714959 other upstream 369842 18296046 ~ 18302575 (-)
hoxc6a hoxc6a,LOC107593966,LOC107664205,LOC107714999,LOC107706971,LOC107697939,LOC107598897 other upstream 416130 18342334 ~ 18350347 (-)
G159076 LOC107715021,LOC107664216,LOC107593990,LOC107598736,LOC107697953,LOC107707026 other upstream 821187 18747391 ~ 18754712 (-)

Expression


Co-expression Network