LOC122329204 (rpl22,LOC102779685)


Basic Information

Item Value
gene id LOC122329204
gene name rpl22,LOC102779685
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056721.1
NCBI id CM032090.1
chromosome length 19062720
location 12554197 ~ 12555217 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043225405.1
ATGACCTCCGGGATAGATTAAACCGCCTGTGACGTCACGCCCGCGCAGGCGTAGTTCTTCCTCAGTTTCGACGAAATTTCTCATTATGGCGCCTGTTAGGAAGCAGCAGAGCTCTAAAGGcggaaagaagaagaagcaggtCGTGAAGTTTACGCTGGACTGCACGCATCCCGTTGAAGATGGCATTATGGACGCTGCAAACTTCGAGCAGTTCCTACAGGAGCGCATCAAAGTCAACGGGAAAGCAGGGAACCTGGGAGGCGGAGTGGTCACCATCGAGAGAAGCAAGAGCAAAATCACAGTATCTTCTGAGGTGCCCTTCTCCAAGAGGTACCTGAAATACCTCACAAAGAAATACTTAAAAAAGAACAATCTCAGAGACTGGTTGCGTGTTGTGGCTAACACCAAAGAAAGCTACGAGCTTCGCTACTTCCAGATCAACCAagatgaggaagaagaggatgatgaggatTAAATTcagtggttttttttgttttgttttttacacctttaaataaattcatgacaaca

Function

symbol description
rpl22 Enables RNA binding activity. Acts upstream of or within T cell differentiation in thymus. Predicted to be located in ribosome. Is expressed in intermediate cell mass of mesoderm. Orthologous to human RPL22 (ribosomal protein L22).

NR:

description
60S ribosomal protein L22

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043225405.1 True 531 mRNA 0.46 4 12554197 12555217

Neighbor

gene id symbol gene type direction distance location
icmt icmt,LOC107703075,LOC107591113,LOC107593379,LOC107687399 coding upstream 8680 12542311 ~ 12545517 (+)
draxinb LOC107703074,LOC107591150,LOC107737703,LOC107712672,LOC107593437,LOC107687472 coding upstream 12283 12536698 ~ 12541914 (+)
LOC122328350 LOC107712654,LOC107737705,LOC107703076,LOC107712673,LOC107593382,LOC107593415,LOC107687469 coding upstream 28287 12524471 ~ 12525910 (+)
LOC122329206 tas1r1,LOC107593439,LOC107712676,LOC107687455 coding upstream 39026 12510231 ~ 12515171 (+)
iffo2a LOC107737575,LOC107712691,LOC107703080,LOC107591153,LOC107593384,LOC107687398 coding upstream 45195 12491866 ~ 12509002 (+)
arhgef10lb arhgef10lb,LOC107703072,LOC107591110,LOC107712685,LOC107687400,LOC107737571 coding downstream 8150 12563367 ~ 12600467 (+)
igsf21b igsf21b,LOC107712688,LOC107737570,LOC107687403,LOC107593375,LOC107591133,LOC107703070 coding downstream 46917 12602134 ~ 12612361 (+)
dhrs3a dhrs3a,LOC107737702,LOC107591109,LOC107712670,LOC107703071,LOC107593436,LOC107687474 coding downstream 58112 12613329 ~ 12620069 (+)
lactbl1a LOC107737568,LOC107591149,LOC108434488 coding downstream 172699 12727916 ~ 12733746 (+)
eif4g3b LOC107737566,LOC107703066 coding downstream 179771 12734988 ~ 12769930 (+)
G157084 NA non-coding upstream 167816 12353090 ~ 12386381 (+)
G157081 NA non-coding upstream 308096 12245874 ~ 12246101 (+)
G157079 NA non-coding upstream 312796 12239849 ~ 12241401 (+)
G156931 NA non-coding upstream 348802 12204256 ~ 12205395 (+)
G156933 NA non-coding upstream 379282 12174530 ~ 12174915 (+)
G157265 NA non-coding downstream 173827 12729044 ~ 12787715 (+)
G157294 NA non-coding downstream 298024 12853241 ~ 12853832 (+)
G157317 NA non-coding downstream 434584 12989801 ~ 13040412 (+)
G157326 NA non-coding downstream 551243 13106460 ~ 13106957 (+)
G157329 NA non-coding downstream 559741 13114958 ~ 13115174 (+)
LOC122328708 LOC107737579,LOC107672049,LOC107565833,LOC107712694,LOC107687392,LOC566587,LOC107593419 other upstream 302215 12246193 ~ 12251982 (+)
kctd6b kctd6b,rpl10,rl10,LOC107671957,LOC107570288,LOC107737715,LOC107560935,LOC108436290,LOC103399204,LOC107672042 other upstream 807627 11697414 ~ 11746570 (+)
LOC122328549 smim4,LOC107560937,LOC107671967,LOC107737614,LOC107712735,LOC107699582,LOC107570283 other upstream 821836 11730980 ~ 11732361 (+)
G156586 NA other upstream 1377164 11174421 ~ 11177033 (+)
LOC122328437 LOC107737657,LOC107560901,LOC107671993,LOC108435244,LOC108275530 other upstream 1468593 11077154 ~ 11085604 (+)
c1qtnf12 fam132a,LOC107591142,LOC107716139,LOC107593919,LOC107687484 other downstream 1538861 14094078 ~ 14126201 (+)
si:dkey-151g10.3 LOC107737519,LOC107716153,LOC107593909,LOC107668334,LOC107673054 other downstream 1744484 14299701 ~ 14343274 (+)
pkig pkig,LOC107737509,LOC107673080,LOC107574720,LOC107564651 other downstream 2048576 14603793 ~ 14636817 (+)
itih6 LOC107737505,LOC107673092,LOC107574689,LOC107695841,LOC107716181,LOC107564649 other downstream 2054312 14609529 ~ 15153978 (+)
LOC122328906 LOC107673074,LOC107737500,LOC107695835,LOC107716175,LOC107574686,LOC107564653,LOC107576192 other downstream 2125643 14680860 ~ 14686618 (+)

Expression


Co-expression Network