Gene
RNA
| Item | Value |
|---|---|
| gene id | G16060 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 5756362 ~ 5758406 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU17965 | True | 1070 | lncRNA | 0.41 | 3 | 5756362 | 5758406 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_05734513_05735964 | NA | coding | upstream | 20349 | 5733121 ~ 5736013 (+) |
| CI01000001_05689002_05702184 | NA | coding | upstream | 53678 | 5688655 ~ 5702684 (+) |
| CI01000001_05587090_05591952 | APOBEC2B, APOBEC2 | coding | upstream | 164224 | 5587090 ~ 5592138 (+) |
| CI01000001_05581818_05584137 | NA | coding | upstream | 171741 | 5581818 ~ 5584621 (+) |
| CI01000001_05579315_05580553 | CCDC115 | coding | upstream | 175659 | 5579315 ~ 5580703 (+) |
| CI01000001_05795264_05798555 | ATP6AP1LB | coding | downstream | 36858 | 5795264 ~ 5799834 (+) |
| CI01000001_05803416_05809184 | SLMAPB | coding | downstream | 45010 | 5803416 ~ 5809306 (+) |
| CI01000001_05814686_05836203 | NA | coding | downstream | 56240 | 5814646 ~ 5837238 (+) |
| CI01000001_05838017_05841551 | ABHD6B | coding | downstream | 79611 | 5838017 ~ 5841683 (+) |
| CI01000001_05842665_05846705 | KCTD6B, KCTD6, KCTD6A | coding | downstream | 84259 | 5842665 ~ 5846924 (+) |
| G16027 | NA | non-coding | upstream | 46979 | 5709181 ~ 5709383 (+) |
| G16026 | NA | non-coding | upstream | 48897 | 5707255 ~ 5707465 (+) |
| G16025 | NA | non-coding | upstream | 49258 | 5706778 ~ 5707104 (+) |
| G16024 | NA | non-coding | upstream | 50176 | 5705884 ~ 5706186 (+) |
| G16023 | NA | non-coding | upstream | 51901 | 5704249 ~ 5704461 (+) |
| G16071 | NA | non-coding | downstream | 26936 | 5785342 ~ 5785694 (+) |
| G16080 | NA | non-coding | downstream | 113200 | 5871606 ~ 5871892 (+) |
| G16084 | NA | non-coding | downstream | 118627 | 5877033 ~ 5877272 (+) |
| G16090 | NA | non-coding | downstream | 127384 | 5885790 ~ 5886041 (+) |
| G15995 | NA | other | upstream | 41411 | 5711885 ~ 5714951 (+) |
| CI01000001_05279884_05287123 | NA | other | upstream | 466406 | 5279837 ~ 5287698 (+) |
| G15794 | NA | other | upstream | 691658 | 5061218 ~ 5064704 (+) |
| CI01000001_03618075_03620436 | NA | other | upstream | 2134911 | 3618075 ~ 3621451 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 4085358 | 1667762 ~ 1671167 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 1774166 | 7531541 ~ 7540586 (+) |
| G17234 | NA | other | downstream | 2273718 | 8032124 ~ 8032483 (+) |
| G17353 | NA | other | downstream | 3457616 | 9216022 ~ 9228859 (+) |
| G17354 | NA | other | downstream | 3476057 | 9234463 ~ 9240677 (+) |
| CI01000001_09435836_09436037 | NA | other | downstream | 3659922 | 9435836 ~ 9436373 (+) |
