G21213


Basic Information

Item Value
gene id G21213
gene name NA
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19291445 ~ 19292341 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU31536
atatatatatatatgtgtgtgtgtgtgtgtgtagtaagTAAATTTTATATGTATCTTTCTACCACAAAAAAGACCAAACACTATCTATACAAATTGTTTACTTTGTCGATCATTTCAGATCATGCTTTTAatttgaacagattttttttgtatagcaatacaaaaaaagcaactatataaaaaaaacatctgaaagaTGTCAGAGGAAACAAGCGTTAGGGCTAACAAGTATATCTTTCCCCGAAGGCTTTAAGTGCTTTACAGTAGACAACATCTGGTCAGAGTCTATGGTGCATGTCCATTCTGCTGGTCCTTCAGAAGGAGGTCCATGTAGGCGCCGTCTATCAGATCATCGTCCTTCACTCCCAGGTCCAGCATGAGCTGATTTGCGATGGCCACTCCTTCTTCTCTGCTCTGCTTCTCTTTCATCACCACCTCCAGCTCCATAAAATCCCCCAGGCCCTCCACACAATCAACATGAACCCTGGTTTGACCCACCATATACAGTTTTCTCTCCTTCTTCACCTGCCCCACCTGCCCCAGGGCATCCGTCAGAACCTTCACCAGCCCCTGTGGGTCGTTGGTAGGGGTTATGGAATAATTTGACAGCTTGGGTCCTTCTGTATCTGGCCTCTCATAGAAGATCAATTGTCCTGTCCCATCCTGGAAGTCCCTGAGTTTCAGGCGTCCTGCGGGCACTTTGAAAAACGTGTCTTGCTGACGGATCACCGTCCCGTCCGACCCGCTCAGCTCCTTTGCGCGCTGCGTGAGGTAAGGCATGTCACgcaaaactgcttttatttcaacatttgacGGCATGTTTAATAGTTGTGCAGGTCCAGGGGCTCTTGTTTGGCGCGCTTACACGCAAAGCTCTAAAGCGCATGCGTAGTAGTG

Function

GO:

id name namespace
GO:0000803 sex chromosome cellular_component
GO:0000805 X chromosome cellular_component
GO:0001740 Barr body cellular_component

KEGG:

id description
ko03030 DNA replication
ko03430 Mismatch repair
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU31536 True 897 TUCP 0.46 1 19291445 19292341

Neighbor

gene id symbol gene type direction distance location
xylt1 xylt1,LOC107567884,LOC107729195,LOC107686990,LOC107590574,LOC107690267,LOC107733871,LOC108439755 coding upstream 29560 19203479 ~ 19261885 (+)
LOC122341328 si:dkey-202l16.5,LOC107690339,LOC107733837,LOC107685903,LOC107590608,LOC107729185 coding upstream 162797 19122323 ~ 19128648 (+)
LOC122329464 rps15a,RPS15A,MGC114789,LOC107686992,LOC106589173 coding upstream 331952 18956030 ~ 18959493 (+)
LOC122342072 psmc3ip,LOC107721526,LOC107654517,LOC107601296,LOC107720012,LOC107590372,LOC107688134 coding upstream 571723 18714925 ~ 18719722 (+)
retreg3 fam134c,LOC107601294,LOC107590373,LOC107720010,LOC107654515,LOC107688130 coding upstream 579810 18704513 ~ 18711635 (+)
c3h17orf75 zgc:153240,LOC107690268,LOC107567861,LOC107729180,LOC107755588,LOC107590573,LOC107687012 coding downstream 460 19292801 ~ 19297531 (+)
ppp4ca ppp4c,LOC107729194,LOC107755586,LOC107690278,LOC107590569,LOC107567834 coding downstream 84634 19376975 ~ 19380629 (+)
mapk3 mapk3,LOC107686994,LOC108411041,LOC107567791,LOC107690275,LOC108256206 coding downstream 92681 19385022 ~ 19393198 (+)
gdpd3a gdpd3a,LOC107590565,LOC107686997,LOC107729175,LOC107755582 coding downstream 102390 19394731 ~ 19399272 (+)
si:ch211-11k18.4 si:ch211-11k18.4,ehd3,LOC107567764,LOC107755580,LOC107690281,LOC107590563,LOC107687000,LOC108411040 coding downstream 111221 19403562 ~ 19408684 (+)
G21151 NA non-coding upstream 3796 19258917 ~ 19287649 (+)
G21188 pigq,LOC107733876,LOC107690265,LOC107590576,LOC107568381,LOC107729199 non-coding upstream 436902 18854109 ~ 18854543 (+)
LOC122341661 LOC107601299,LOC107654457,LOC107720081,LOC107688136,LOC107721482 non-coding upstream 546860 18574687 ~ 18744585 (+)
G21180 NA non-coding upstream 587762 18702584 ~ 18703683 (+)
LOC122331012 NA non-coding upstream 636730 18652361 ~ 18654715 (+)
G21215 NA non-coding downstream 12511 19304852 ~ 19305058 (+)
G21239 LOC107687002 non-coding downstream 145666 19438007 ~ 19440646 (+)
LOC122341657 NA non-coding downstream 163085 19455426 ~ 19459635 (+)
G21269 aclya,LOC107687019,LOC107729187,LOC107590593,LOC107755575,LOC107567706,LOC107690323 non-coding downstream 178658 19470999 ~ 19472687 (+)
G21246 NA non-coding downstream 191160 19483501 ~ 19484384 (+)
G21202 NA other upstream 298211 18991458 ~ 18993234 (+)
G21125 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693,LOC106591169,LOC106564622 other upstream 415318 18869266 ~ 18876127 (+)
LOC122341799 rab40c,LOC107567894,LOC107690266,LOC107685905,LOC107590575,LOC103366693 other upstream 449685 18828665 ~ 18841760 (+)
G21183 LOC107720013,LOC107721528,LOC107688135,LOC107654518,LOC107601298 other upstream 557680 18733165 ~ 18733765 (+)
G21182 LOC107654518,LOC107601298,LOC107721528,LOC107688135,LOC107720013 other upstream 559347 18725961 ~ 18732098 (+)
ypel3 ypel3,LOC106600728,LOC103040367,LOC107686999,LOC107590566,LOC107567778,LOC105012807,LOC104942727,LOC108259066 other downstream 107067 19399408 ~ 19403176 (+)
LOC122341338 LOC107567476,LOC107754244,LOC107690310,LOC107653556,LOC107731194,LOC107570937 other downstream 771929 20064270 ~ 20069253 (+)
LOC122341546 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107567469 other downstream 802510 20094851 ~ 20113498 (+)
eftud2 eftud2,LOC107690313,LOC107731090,LOC107653466,LOC107754997 other downstream 893194 20185535 ~ 20195721 (+)
LOC122337427 ngfra,LOC107661207,LOC107708544,LOC107689096,LOC107568444,LOC107566195 other downstream 1589857 20882198 ~ 20956574 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000069_00147622_00154047 NA coding CI01000069 null 147507 ~ 154068 (+)