nr1d1 (LOC107585045,LOC107740628,LOC107662394,LOC107582883,LOC107667757)


Basic Information

Item Value
gene id nr1d1
gene name LOC107585045,LOC107740628,LOC107662394,LOC107582883,LOC107667757
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22568967 ~ 22575990 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043235129.1
CTGCGCTCATCTCGTCCATGCTCCTCGGAAcgaagcaaaaagcaaaaccgGGCCGACTTGACAGAACAGTTCAGAGCGACACAGATTGGGCGAGTGACAGGCGCACTGGCGTGTGAGACGCTTTTACTGAATGAACCGCATTTCCCTGACGCCTTCGCGCAGCATTTAACATCACTTCTCGGCATCTAGCAGATGAGCGCGTATTTTATGCGGTTTTAGGACGGTCGTTTCGTGGCAGTTATGCCTTTATCGTAAACAAGAACCGAtctctaagaaaaaaaaaacagaagtgcaTCTGGAGAGAGTGCATCTCTCTGGCGATTCTGCCATAAATCTGCATGACTTTACTGGAGCTCAACATGACGACAGCAGTAGATACAAGCAACACAGGTGGGGTAATATCATATATCGGGTCATGCGGAGGCTCTCCCAACCGCACCAGCCCCGTGTCCATGTACAGCGAGAACTCCAACAGCAGCCTGCAGTCCCTTACACAGCCCTGCTTTGGCTCTTCATTCCCACCTTCCCCCAATGGATCCCAGGATTCCTCACGCATGtacaccagcagcagcagcagcagctcaagTTCAGGATCAGGAGAGGACGGAAGCTCATCGTGCTCTGGTGGATCCCCAAGAGGACGCGATGATGGTGGAAGTGCACGCAATTCACCCAACAAATCAGTTGCCACCCTTACTAAGCTGAACGGAATGGTGTTGCTTTGCAAAGTGTGTGGCGACGTGGCTTCAGGATTTCACTATGGTGTCCATGCCTGTGAGGGATGCAAGGGCTTCTTTCGACGCAGCATCCAGCAGAACATCCAGTACAAAAAGTGCCTTAAGAATGAAACCTGTACCATTATGAGGATCAACCGGAACCGGTGCCAGCAGTGCCGTTTCAAGAAGTGTCTGTCTGTGGGAATGTCCCGAGACGCTGTTCGTTTTGGCCGTATCCCGAAACGTGAGAAACAGCGTATGCTGGCCGAGATGCAGAACGCCATGAACAACATGGTGAACAACCAGCTTCAAAATGAATTCCAGCTGGCGAGCATCACATCCAACACCCCTTGCTCTTCGTCTTCATCCCCATCCacctcttcctcatcctcatctccGTGCCCGGGGCTTACAGTGGGACCCCAACCCCAGCCCCCCGCAGTGCCCATAGCATCGTCCCCTTCCCCTCCGGCCCCAGCCTCCCCTTCAGTGCAGCCGGCTCAGAGTCCCCCGGCACTGACGACTTCTCCACCACCGTGCTCCAGCCCAGGTGTAGACAAAACCATAGCCGCCATAACCAGAGCACACCGCGAGACCTTCATCTACGCACATGATAAGTTGGGTCCAGCACTCCTGCCACACAACGGGGAGCTGGACAACCAAAGCAGCAACCGCTGCATGGCTGGATACCACCTCAACGGCCACAACACCATCTACCACCATGATAACAATGTCCCTCATCATTGTAACAACTTGGAGGTGCCACAAGAAAACGGCCTCCATTTTCAAGCCTCCCAAGCCTCTGGACAACATCAGCAGCACAATAACAATGGTCAGCGAACTCCAAACAGTAACCTCTTTGGCATCCACCACAGTCAGGAGATGAACAGCAGCTCCCAGGGTCAGAACTGTCCATGGAAAAAACGCAAGGACATTCTGCTGgctTGTCCAATGAACATGCATCCTTACTCAGACCCCAACAAAACACCACAGGAAATCTGGGAAGACTTCTCTCTTAGCTTCACCCCAGCGGTTAGAGAGGTGGTGGAGTTTGCCAAACATATCCCAGGCTTCAGCACGCTATCCCAGAACGACCAGGTCACTTTGCTGAAGGCCGGAACCTTTGAGGTCCTCATGGTGCGCTTCTCCTCTCTGTTTAACTTAAAAGAGAGGACCGTAACGTTCATCTCTGGCACCACCTACAGCCTGGAGGCCCTGAAAAGCATGGGCATGGGAGACCTGCTGGGAACCATGTTCGACTTCAGTGAAAAACTCAACGCATTAGAGCTCTCAGCAGAAGAACTGGGACTCTTCACTGCAGTCGTGCTGGTGTCTGCAGACCGCTCTGGCATTGAAAACGTGAATTCAGTGGAGATGCTTCAGGAGAGTTTAATCCGGGCTCTCCGATCCCTCGTCAGCAAGAACGCCCCTAACGACGCCTCCCGATTCACCAAGCTGCTGCTCAAACTTCCTGACCTGCGCACGCTGAATAACATGCACTCAGAGAAGCTGCTCTCATTCCGCATTGACGCCTGAGGTTGCAAGAAGCTGGTGAAAGTGGGTCACCTCTGGTTGACTGCAAGACAGAATGGGTACAAACATTAGAACTCTTTCCAAGAGAACCCACCAGAAAGCAAACTCATGCCTTTGGCGCCTAAAAGCACTTGATGACACATTTAAAGGGACGCTTTGGTGCCTAATGGTTGGTCAGTAGTCTATATGGCTTGATAACCATAACGGGTCCGTGAGCCACTTTCAGTACTTACCTGAAATGGGTGGAAAGATTAAGGTAATGataaagcagacaaaaaaagccACTCATATTTGGACTGCATTTTCATGGGGAACAAGTGCAAAATTCCTCTCGCAAGGAGTCACAGCCAGGCCAGAAGGATCTCCAGGCCACTTCCAAACAGGGGACGATGGCCTCCTCGTGCCCAGTGCGGCCTGGGTTCCTGCTATACCCACACTCAGAGAAAGTTGTGATCATTTTAACTCAAATGCAAATGACAAGCTGTACGTGGTATTAACCTTCACACATAATCACATCCCTGTGACTTtgtaaaatatgtgtaaatatgatatacatactttaaatgttttaaaatgtataatatatatttttttgtaaagttcACATGCTCAGCGCAAATTATGAATCTATTCAAGCACAGACGTATAAGTAGAGTGTATGCATATTATAGACATAAAGACATGTATTTCAGTTGTCTTCTTCATAAAGGCATTTTATGAAACAAGAA

Function

NR:

description
PREDICTED: nuclear receptor subfamily 1 group D member 1-like isoform X1

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03728 NR1D1; nuclear receptor subfamily 1 group D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043235129.1 True 2977 mRNA 0.50 8 22568967 22575990

Neighbor

gene id symbol gene type direction distance location
ppp1r9ba ppp1r9b,ppp1r9ba,LOC107740632,LOC107717206,LOC107667750,LOC107582927 coding upstream 78177 22455402 ~ 22490790 (+)
col1a1a LOC107585052,LOC107740634,LOC107582926 coding upstream 119318 22434373 ~ 22449649 (+)
gngt2a NA coding upstream 181482 22384731 ~ 22387485 (+)
LOC122341813 NA coding upstream 186180 22374082 ~ 22382787 (+)
LOC122333458 NA coding upstream 197295 22365276 ~ 22371672 (+)
hoxb13a hoxb13a,LOC107687788,LOC107662424,LOC107585093,LOC107717198,LOC107740673,LOC107582955 coding downstream 97486 22673476 ~ 22675120 (+)
hoxb10a hoxb10a,LOC107662435,LOC107740623,LOC107585092 coding downstream 109023 22685013 ~ 22689691 (+)
hoxb9a hoxb9a,LOC107585091,LOC107662432,LOC107717219,LOC107687790,LOC107582956 coding downstream 115188 22691178 ~ 22699171 (+)
hoxb8a hoxb8a,LOC107662386,LOC107582957,LOC107585089,LOC107740672,LOC107687792,LOC107717220 coding downstream 127934 22703924 ~ 22706737 (+)
hoxb7a hoxb7a,LOC107740671,LOC107662388,LOC107717221,LOC107585088,LOC107687793,LOC107582958 coding downstream 132004 22707994 ~ 22712057 (+)
LOC122341843 NA non-coding upstream 479036 22035882 ~ 22089931 (+)
G22201 NA non-coding upstream 834545 21734138 ~ 21734422 (+)
G22198 NA non-coding upstream 932397 21636123 ~ 21636570 (+)
G22197 NA non-coding upstream 932888 21635744 ~ 21636079 (+)
G22084 LOC107684649,LOC107590786,LOC107725047,LOC107582907,LOC107678868,LOC107710878 non-coding upstream 1185843 21381808 ~ 21383124 (+)
G22554 ddx5,LOC107695114 non-coding downstream 364257 22940247 ~ 23028505 (+)
G22581 LOC107740652,LOC107662412,LOC107582935,LOC107687786,LOC107710056,LOC107578312,LOC107577241 non-coding downstream 513483 23089473 ~ 23095422 (+)
G22582 LOC107687786,LOC107710056,LOC107662412,LOC107740652,LOC107585075,LOC107582935,LOC105912825,LOC103364773 non-coding downstream 524954 23100944 ~ 23148618 (+)
G22584 NA non-coding downstream 538288 23114278 ~ 23116840 (+)
LOC122341922 LOC107695122,LOC107583308 non-coding downstream 820511 23396501 ~ 23400922 (+)
G22329 LOC107585049,LOC107740630,LOC107662396,LOC107582928,LOC107717208 other upstream 21759 22546158 ~ 22547208 (+)
G22344 rapgefl1,LOC107585050,LOC107662398,LOC107740631,LOC107717207,LOC107667751 other upstream 38907 22528989 ~ 22530060 (+)
hdac5 hdac5,LOC107667756,LOC107582878,LOC107585055 other upstream 232740 22268986 ~ 22336227 (+)
wnk4b wnk4b,LOC107585056,LOC107662403,LOC107740640,LOC107683678,LOC107582920,LOC107754305,LOC108429078 other upstream 543056 21976509 ~ 22025911 (+)
G22301 LOC107683684,LOC107754312,LOC107585098,LOC107662430,LOC107740676,LOC107582950 other upstream 592302 21975252 ~ 21976665 (+)
hoxb5a hoxb5a,LOC107717200,LOC107662384,LOC107687777,LOC108413114,LOC107740619 other downstream 146032 22722022 ~ 22726158 (+)
hoxb2a hoxb2,hoxb2a,LOC107585087,LOC107662381,LOC107582889,LOC107687781 other downstream 189657 22765647 ~ 22770602 (+)
LOC122341356 il2rb,LOC107695139,LOC107583317 other downstream 323343 22899333 ~ 22908135 (+)
prr15la prr15la,LOC107710040,LOC107585086,LOC107662431,LOC107582938,LOC108412372 other downstream 582229 23158219 ~ 23163716 (+)
dnal4a dnal4a,dnal4,LOC107662365,LOC107585028,LOC107690743,LOC107740666,LOC107710037 other downstream 762389 23338379 ~ 23343640 (+)

Expression


Co-expression Network