LOC122331939


Basic Information

Item Value
gene id LOC122331939
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 12987350 ~ 12992329 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_279
agtagggGCAGATGAATGAAAGTAACTCATAGGCACCAGTCACTGTGTTACTTCGACTACTGGGGGAAAGGAACCAAAGTCACCGTTACCTCAGCTCAACCGTCTCCGCCAAAGTCGATCTTCGCCATGTCCCAGtgctctcctgattcagacggGTTTATCACCATCGGCTGCATGGCGAGTGGTTTCTCACCCGCGGactctctttctttcaaatGGACGGATTTTGATAAGAAATCGTTGAGTGATGTCGTGCAGTATCCGGCGTTCGGGAAAGACGGAGACTATACCAAAATCAGCCATCTGCGCGTGAGAAAAAGCGATTGGGATCCCAAAAAACCTTACCAATGCGAAGCGTCAAATTCTCAAGGCGCGAAAGCATCTTCTCTTGCTCCAAAAGCCCCACCGCCAGATCTGCGTGCAACCCTGTTCTTAACAGAACCTACAAAAATGGAGTTAGACAATGAAACAGCAACCTTCATGTGTTTAGCCCAGCGGTTTTCGCCTAATGAATACACATTTAAGTGGTCTCTGAATGATAAAGAAGTGACAAATGTGATAGACACATGTGACAAAACTGAGAAGAAAGAGTCAGTAACCAAATATAGCGCCACAAGCATTTTGCAAATCAGTGCCGCAGACTGGAAGAAGCAAAATACGAAAATGAAGTGCGAGTTCCTGCACAAGGCGGGAAATTTAGCAAAAGAGGCTGAATACTCagCTCCTTATGTAGAGTTCAACGAAATCACCGTTGATATTGTTCCTCCTTCACATAAAGACATGCTGAAAAACAGAACAGGAGTGCTGAAGTGCAAAGCTTCAGCAGAGTTTTTGGGATCCTTCAATATAACAATAACAGCGAATCATAAGGACATTGCCAAGAAACCATTAGAGGGACAAAATGTGGAACTTGACGCTCCAATAGGCTATGAAGAATGGAGAAACGGCACTAAATTTACATGCAAGGTTGAACACGATGACCTCGCGGAGCCCACGTTGAAAACGTTCAACAGAGAAAATgTCCCAGGAACAGCCAAGAAACCCACAGTTTACATATTAGCGCCCCCAGAGCACAGACCAGACGAACCGGTGACCCTGACATGTTACGTGAAAGACTTCTACCCCAAAGAGGTGTTTGTGTCTTGGCTTGCTGACGATGAACCTGTGACTTCTAAATACACCACTAGCCTGCCAATTCAGAACGATCAAACCTTTTCAGTCTACAGTCAGCTAACAGTTAATGCTTCCAAATGGAAGAATGGCACAGTGTTCAGCTGTGTCGTGTATCACGAAAGCATCGATGACAATATGCGCGTACTGACCAGATCTATTACTGACGATACTGATAAGGCAGGTGTAATTAATCTAAGTATGAATACTGCATCTTGCAAGGCCTAGAGCATTGTGTATGTGGTGTCCTCCTGTTATGCCTGTTAAGTGCTCATTTTGTTTTCTCCTTTTGTCTTTTGGGTTGCATGTCCATTTTTGTAATCGTGTTGGTCTTTAATGTTTGTGGCTTCTTGCTTCTTTGAGATACTTTCTTGCACGTTGCATTTAGGAAGAgactaataaaaaagaaacaaagcataA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_279 True 1590 C_gene_segment 0.43 6 12987350 12992329

Neighbor

gene id symbol gene type direction distance location
LOC122331923 NA coding downstream 146 12981087 ~ 12987204 (-)
LOC122332086 gtf2f1,LOC107737737 coding downstream 7257 12974708 ~ 12980093 (-)
LOC122329559 LOC107582973,LOC107723206,LOC107554143,LOC107695115,LOC107689629,LOC107737739,LOC796777,LOC108436680 coding downstream 325502 12571028 ~ 12661848 (-)
sgsm3 sgsm3,LOC107737740,LOC107695086,LOC107758493,LOC107689630 coding downstream 442869 12530109 ~ 12544481 (-)
si:dkey-283b1.7 si:dkey-283b1.7,LOC107758487,LOC107695187,LOC107689703,LOC107554098,LOC107737768 coding downstream 465563 12515150 ~ 12521787 (-)
LOC122332129 NA coding upstream 57957 13050286 ~ 13050861 (-)
LOC122332149 NA coding upstream 90880 13083209 ~ 13083734 (-)
LOC122341303 NA coding upstream 91697 13084026 ~ 13084966 (-)
LOC122332140 ighm,ighv5-5,ighv5-4,ighv5-8 coding upstream 94046 13086375 ~ 13087267 (-)
LOC122341304 LOC107710248 coding upstream 99881 13092210 ~ 13092846 (-)
G19672 alkbh7,LOC107723204,LOC107690706 non-coding downstream 84440 12900781 ~ 12902910 (-)
G19677 LOC107737766 non-coding downstream 100396 12864310 ~ 12886954 (-)
LOC122332655 NA non-coding downstream 691927 12294140 ~ 12295423 (-)
LOC122341243 LOC107729463,LOC107658509,LOC107582987 non-coding downstream 716414 12265845 ~ 12270936 (-)
G19518 LOC107729456,LOC107658501,LOC107582995,LOC107554123,LOC107689649,LOC107737759 non-coding downstream 756971 12226575 ~ 12230379 (-)
LOC122332187 NA non-coding upstream 80231 13072560 ~ 13072828 (-)
LOC122332138 ighv5-5,ighm,ighv5-4,ighv5-8 non-coding upstream 87741 13080070 ~ 13080621 (-)
G19703 ighv6-1 non-coding upstream 98342 13090671 ~ 13091152 (-)
G19726 NA non-coding upstream 133192 13125521 ~ 13129608 (-)
G19811 NA non-coding upstream 365250 13357579 ~ 13357789 (-)
cacna1aa LOC107690704,LOC107571502 other downstream 224260 12681990 ~ 12763090 (-)
G19606 LOC107583095,LOC107690711,LOC107723203,LOC107571501,LOC107689702,LOC107737775 other downstream 307550 12622783 ~ 12679800 (-)
LOC122342093 LOC107583078,LOC107754431,LOC107583076 other downstream 643478 12339187 ~ 12343872 (-)
LOC122341756 NA other downstream 1066583 11909775 ~ 11920767 (-)
G19383 NA other downstream 1106391 11853748 ~ 11880959 (-)
G19676 LOC107690708 other upstream 13667 13005996 ~ 13068190 (-)
G19700 NA other upstream 54712 13047041 ~ 13047494 (-)
gng13b NA other upstream 793680 13786009 ~ 13792602 (-)
G19933 NA other upstream 813039 13805368 ~ 13805978 (-)
si:dkeyp-72e1.6 si:dkeyp-72e1.6,LOC107721468,LOC108274424,LOC108438007,LOC103040592 other upstream 1210601 14202930 ~ 14204350 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G274950 NA non-coding CI01000069 null 4942355 ~ 4973465 (+)