CI01000003_00644619_00663181


Basic Information

Item Value
gene id CI01000003_00644619_00663181
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 643655 ~ 663280 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_00644619_00663181.mRNA
CTTTAAAAAGCCTTGCTTGATACAGGCTGGCACATTCAGCACATCTCAGATTGAACTAGAATGATCCAAACTAGCCGTTTCTCTTGCACTTAAATGTCATTTTCTTGATGATAGGAAGGGCAGCATATGAAAGAGTAGTGGAGGAGCTCATGCTGCTCACTAGATTGCCAGATTGACAGCACAATTTTAGCATCTGATCTCACAGATGAGATAATTGCCCAAATGCCATGTCATGTCACCCCAGATTTTGTTGTTAGAACCGTTTCCAATGATTGTCCTTTAGGACTGGAGCCGATGGCTTGTGTGCGGATTTAGTTACAGGCAATGTAAAGCATCGCTTTAAAGCATTACCATTCGGTCACCCTTTAATAACAGTAGGACAGCACTTATCTTGCTGGTTTATGCGTTTAGACAGATGTAGAGCTGAGGCTCATTATGAAATTGTTACAAGAAATTATACATTCAAACATGTATATTTAGTTGTAGCTCCTGGTTATGTGCGTTTATAGTGGTATTTATTCCCCTTATCGGTACTGGGTGCTTCCCTATATTATTAAGGGGAAAATAAGAGTCTGTTTACTAGAATTTTTTTCATGCTTATCCTTAAGGATAAGCTTATGTTCTAGTGAGTGGAATGTTGACAGTGTAATTTTGACAAGACCTCTGAGGCACATGTGAACTAGTTCTTACACTAACTGCTAACTTCACTTTCTTTAGAGATTGCAAGCTTATAAATGATGCAAGGAAAAAGAAACAAAGTTATTTGTCTATATATTTCTATATAAATTCTTCTCACAGATTTTGAAGAACCTTAAAATGGTTAAAAAATCATTTATCCTTGAATCATACATCACAGCTTGCGCTGTTTGTTGCGTTCTGGAAAAAACAACACACATTATAATAAGAATATTGAAATATAAACCATTTGAAATGTATATATACGGACAATTTATACATATAAAAAATGTACATAATATATTATGACCCTGTGAGCACGGTGAATGTTGGCACAGTGTGCAGAGGTGGAAACTGGAATCAAAAACTGGAGTCAGTTTGGATTCCAGTCTTTAGTGGTGAAGTATCAGGTGTATCCCAGGAAAGCTCCAGATTGAATAGTGAGCTGCCTACCTCAGTCACAGAGGACCATGACTCAATAGTGAGTGGTTGTGGTTGCCAGGAGATCCTCCTCCTCATGTGCTCATCAGGGAAGACTAAATATAGACAACATGATGAAGACACAGGATCTCCACAGGAGCAAAGCTCGCCCCAGTTCACGGATGAGGCTCCTGGGCCAGAGCTGGTCCAAGTGGCCGAGAAGAACCTTTCCCAGATTGAGAACGTGCATGGCTATGTGGCACATGCACATATCTCCCCAATGAAGGTTGAATCGCTGGAATGCATCTTCGATGGGCCATCCACTGTAGTGAATGAGGAGAGTCCTCCGCCTCCTACTACTCCCCTCTCCAACCCGTACCCTCAAAGTCCTGTGACCGTCCAGGTACCTGCAACGTATGTTTTTGTCGCCGGCACTCACTATGTGCAGAAACTGGCTTTGAAATGCCTGCGTAAGAAGAGGTGGAGGGGGGCAGCAAATGGTAATCCAATTGATCTGGACCTGGAGAATACTTCATTATCTTTCTGTGCTTTTTCAAAAACAAAAATCTCCCTTTTTGGTCTAATTACTGCCAACTACTACACTTTTGATGGGGAAGTCGAGGCAGCAGCACCAGTTCGGCCCATGGTGGCTCATCTGGACCCAAGCTCAGACAGTGGTCCATACGTAGTTCCTCTGAGGAGACTGCAAAACAGACCCCGTCCCGCTGGCGCCGAGTTCTTGCTACCCTCACCCGCCTCAATACCTTCACTGACTGCATCATATCAAGGACAAGTCAGGTAAGTTCTGCAAGCTCATGCAGAAGTGCCACTGGGACACAGACATCAAGAGATAATGTAGGCTTTCAACTCTTGGTTGGCAATGACAAGTTCTCTCTATCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_00644619_00663181.mRNA True 1996 mRNA 0.43 7 643655 663280

Neighbor

gene id symbol gene type direction distance location
CI01000003_00596144_00607951 NA coding upstream 35617 596144 ~ 608038 (+)
CI01000003_00568546_00573291 NA coding upstream 69786 568546 ~ 573869 (+)
CI01000003_00538178_00547944 PHB2, PHB2A, PHB2B coding upstream 95672 538085 ~ 547983 (+)
CI01000003_00431473_00447759 MFN1A coding upstream 195705 431473 ~ 447950 (+)
CI01000003_00413809_00414819 NA coding upstream 228499 412590 ~ 415156 (+)
CI01000003_00665762_00716862 DLG1, DLG1L coding downstream 1681 664961 ~ 717379 (+)
CI01000003_00731635_00742538 TFR1A coding downstream 67920 731200 ~ 742609 (+)
CI01000003_00747650_00802075 NA coding downstream 83267 746547 ~ 802681 (+)
CI01000003_00842413_00868623 TNK2 coding downstream 179133 842413 ~ 868663 (+)
CI01000003_00981851_01059504 TMTOPSA coding downstream 318571 981851 ~ 1059504 (+)
G22585 NA non-coding upstream 61250 582068 ~ 582405 (+)
G22551 NA non-coding upstream 82043 560920 ~ 561612 (+)
G22544 NA non-coding upstream 121002 522149 ~ 522653 (+)
G22524 NA non-coding upstream 174753 468673 ~ 468902 (+)
G22490 NA non-coding upstream 192554 450548 ~ 451101 (+)
G22583 NA non-coding downstream 81401 744681 ~ 744938 (+)
G22574 NA non-coding downstream 154518 817798 ~ 819540 (+)
G22601 NA non-coding downstream 216351 879631 ~ 879868 (+)
G22602 NA non-coding downstream 216673 879953 ~ 880262 (+)
G22603 NA non-coding downstream 217341 880621 ~ 880871 (+)
CI01000003_00390997_00406970 WDR33 other upstream 248441 390622 ~ 408312 (+)
G22420 NA other upstream 454216 179531 ~ 189439 (+)
G22578 NA other downstream 261523 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1199988 1862854 ~ 1868137 (+)
G23870 NA other downstream 1617380 2280660 ~ 2285641 (+)

Expression


Co-expression Network