CI01000003_01280201_01309764


Basic Information

Item Value
gene id CI01000003_01280201_01309764
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1279767 ~ 1310125 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01280201_01309764.mRNA
GTATTAATGCAAATGCAACCAGTCAAACTTTTTTACAGTGTATGTATGTGACTTGGCCTGTTAGCCAGAGTGCTAATGAACAAGACAGTTGTTAGAGATATCCATCTCATCCTTTTCATTCGTACTTTTGCATTATGTTCCCACACCATTATGAGGATGATGTTTATTCAAGGTGAGGGTCATTAGTTTTAGATTTAGCCTGATCTGGTTTGAGCATTCATGCTAATGTGAGAGGCTTTGATGGCTTCAGACTGGGTGCTTTGTGCTGGTCCATTAGTGATAAAGGCCATCAGAGAGTTTAATGTGCACTGCGCTCATTTAGCGGCTAGGCTACCGGATGAGTCTAGCAGAGACGCACCTCATTTTCAGCTCTTTGGCAACCTTGACCCCACTTCAAAAGTCAGCATGTCCACAACTAATCTCCATGACACACAATGGCCAAACTTGCGTCAGGGCTGCTACGGTCCCTCAAGAAAACATGCTTAAGACATTACAATGGGACCAAGCCATACTGGGCTTATTTTGCCAGCTCCAGAATTTCAGATTTATCACAGCAGCAGTGCAGCAAGTATGTGATGGAAAATTGGATGCCTTTGCCACAGATGGAGAGCTCTGCTGGTTTAAGGAGAAGTTTCCGGCTGAGCCGGAAGGACAACACGAGTCAGCAGGTGAGACAGAAGATGGGTGAAGCACATGCTGCTATCCATTTCCCTGTTTATCAGGAGGTTTTGCCTCACCAGAGAAAGCCTGAAGAGCCGCACCGCCTTGTGCTTCTAACTGGGCCTATAGGGGTTGGTGTGACCGAGTTGAAGAGAAGACTTCTACTCTCTGACCCAGAACACTTCAGTGTAACTGTGCCACATACCACTCGGGAGCGGAAAAAGCAAGAAAGAGAAGGGGTGGAGTACCATTTTGTCTCCAAACACACTTTTGAAAAAGATATCCTCAACCACAAATTTTTGGAGTATGGTGAACATAAAGGGAACTACTATGGTATGAGTCTGGATTCGGTGCGCAGGGTCATGGCGGAGAGCAAGGTCTGCCTGTTGGATGTGGAACCTCACGTGAGTAAAAGATCATTCATGAATGGCAGGGTGTGTGAGTGGCAAGAAGCACTGGATCAGACTATAGCAGCCCTTTATTCCTCCGAGTTTAAACCCTATATTGTATTTGTGAAGCCTCCATCAATAGAGCGCTTAAGACTGAGCCGAAGAAAAGCAAAAGTTCTGGCAAGTCAGAATGAGCAAACAGCCACAAAATTCTTTACGGAGGAGGACTTCCAGGACATGATTACCACTGCCCAAGCCATGGAGTATAAATATGGCCACTTGTTTGAGAAAGTGATCATCAATGACGATCTGGCCATGGCATTCACTGAGCTGAGAGACGAACTCACAAAGATAGAAACAGAGACTCACTGGATCCCAAATACATGGGCTCATGTCTGAGAAAGCAATTCATGTTCACTGAACCACTTAGACACATGATAACTTTTGACTGTTTTGGATATTTTCTGCATATAAAAAGGTACACCATATTATTGTAATTATACGCTTATAAGCAGTGTGTGCTGGCCCGTCATGAATCAGCTCCATTCATAACTGCCAAACTCATGACATTGCACTGAAGTTGAAACAGTTTTGTTTATGTTGAGAAACAAGTAATTGTAAAGAATTTTTATCTCCCCCTAATTCCTACATAATGATATACATTATGCTATTTTACTAAATGATTTCTATACACATATTGCTTTGTGCACTGTTGTGGCTCATGTTTTGACATTAATCACTTACAGACGGGGATTTTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01280201_01309764.mRNA True 1809 mRNA 0.43 7 1279767 1310125

Neighbor

gene id symbol gene type direction distance location
CI01000003_01258265_01259530 NA coding upstream 20216 1258265 ~ 1259551 (+)
CI01000003_01140472_01168860 NA coding upstream 110867 1140342 ~ 1168900 (+)
CI01000003_01126525_01129929 ADIPOQB coding upstream 149442 1126098 ~ 1130325 (+)
CI01000003_00981851_01059504 TMTOPSA coding upstream 220263 981851 ~ 1059504 (+)
CI01000003_00842413_00868623 TNK2 coding upstream 411104 842413 ~ 868663 (+)
CI01000003_01329453_01342093 NA coding downstream 19328 1329453 ~ 1342672 (+)
CI01000003_01356590_01360272 NA coding downstream 46352 1356477 ~ 1360348 (+)
CI01000003_01382733_01410162 MIB1 coding downstream 72323 1382448 ~ 1410190 (+)
CI01000003_01430247_01451033 NA coding downstream 120122 1430247 ~ 1451626 (+)
CI01000003_01489211_01493471 GATA6 coding downstream 177712 1487837 ~ 1494025 (+)
G23056 NA non-coding upstream 57105 1176830 ~ 1222662 (+)
G23039 NA non-coding upstream 209259 1070290 ~ 1070508 (+)
G22641 NA non-coding upstream 350620 928942 ~ 929147 (+)
G22625 NA non-coding upstream 365973 913534 ~ 913794 (+)
G22615 NA non-coding upstream 383438 896121 ~ 896329 (+)
G23175 NA non-coding downstream 17438 1327563 ~ 1327875 (+)
G23217 NA non-coding downstream 35148 1345273 ~ 1345574 (+)
G23223 NA non-coding downstream 67934 1378059 ~ 1378355 (+)
G23242 NA non-coding downstream 176057 1486182 ~ 1486398 (+)
G23244 NA non-coding downstream 194424 1504549 ~ 1504981 (+)
G22578 NA other upstream 354519 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 884553 390622 ~ 408312 (+)
G22420 NA other upstream 1090328 179531 ~ 189439 (+)
CI01000003_01863421_01867859 NA other downstream 553143 1862854 ~ 1868137 (+)
G23870 NA other downstream 970535 2280660 ~ 2285641 (+)

Expression


Co-expression Network