CI01000003_01382733_01410162 (MIB1)


Basic Information

Item Value
gene id CI01000003_01382733_01410162
gene name MIB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1382448 ~ 1410190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01382733_01410162.mRNA
TTATATATCGCCAAAGTACACAGTTTTGAATAGTTCACTGATAAAATGTTTCGTCAGGTTATCAGTAGACATTAATTTTATGAATTAAGCAAACCAGGACATTCATATTTTTTTTTGTCATACCGCTAAATTGTCCTCTACTGGCCATTGACCCATATGTAAGACGGGACGAATTAGTTCATTTAAAACCTCATATTTTCTGAGCTGGCTTAACGTCTAGCTAAAAGTACCTTTTATTGCAATATTTGCTTGTAAATGACCACCGGTAGGAATAACAGAGTCATGATGGAAGGAGTGGGTGCTCGAGTTATCCGCGGGCCTGACTGGAAGTGGGGTAAACAGGATGGAGGAGAGGGGCACGTCGGCACCGTCAGGAGTTTTGAGAGTCCGGAGGAGGTGGTGGTGGTGTGGGATAACGGCACCGCCGCCAATTACCGCTGTTCCGGAGCCTATGATGTGAGGATTTTAGACAGTGCGCCCACAGGAATCAAGCACGATGGCACCATGTGTGACACCTGTCGGCAGCAGCCCATCATCGGGATCCGATGGAAATGCGCAGAGTGCACCAACTATGACCTCTGCACCACCTGTTACCATGGTGACAAACACCACCTGCGCCACAGGTTCTACCGCATCACCACCCCTGGTAGTGAGAGAGTTCTTTTGGAATCTCGTCGCAAGTCGAAGAAGATCACAGCCCGGGGCATCTTTGCAGGAGGACGGGTGGTGCGGGGAGTGGATTGGCAGTGGGAGGATCAGGATGGCGGGAATGGAAGGAGAGGGAAGGTGACTGAGATCCAGGACTGGAGTGCTGCCAGCCCCCACAGCGCAGCCTACGTCCTCTGGGACAACGGGGCCAAGAACCTCTACCGAGTGGGATTCGAGGGCATGAGAGCGAGAATCAACATGAAGACCAAAGAGAGCAATGGGCGTGGTGAACAGAATGGAAACAGGAACCCTGGAGGCCTGCAGATCGGAGACTTGGTCAACATTGATTTGGACCTGGAGATCGTTCAGTCGCTGCAGCACGGTCACGGAGGCTGGACTGATGGCATGTTTGAAACGCTCACCACCACAGGCACTGTGTGTGGCATTGATGAAGACCATGACATTGTTGTGCAGTATCCTAGTGGAAACAGGTGGACGTTTAACCCAGCAGTGCTAACCAAGGCAAATGTCGTACGTAGTGGAGAGGTGGCGGCTGGTGCTGAGGGAGGCAGCTCTCAGTTCATGGTGGGAGACTTGGTCCAGATCTGCTATGACATTGACCGCATCAAACTTCTCCAGAGAGGACATGGAGAGTGGGCTGAAGCTATGCTGCCAACCCTTGGAAAGGTGGGCAGAGTGCAGCAGATTTACAGTGACAGTGACCTGAAAGTTGAGGTGTGTGGGACATCCTGGACATACAATCCAGCTGCTGTCACCAAAGTGGCTCCTGCTGGATCTGCTGTTACTAATGCTTCTGGAGAGCGTCTGTCTCAGCTCCTCAAGAAGCTTTTTGAGACGCAGGAGTCTGGAGACATTAATGAAGAGCTGGTGAAGGCCGCGGCCAATGGTGATCTGGCCAAAGTAGAGGACATCCTGAAGAGACCTGATGTAGACGTGAACGGGCAGTGCGCAGGACACACTGCCATGCAGGCAGCCAGCCAAAATGGCCATGTGGACGTCCTCAAACTGCTGCTGAAACATAATGTAGACCTGGAGGCTGAGGATAAGGATGGAGACCGAGCTGTCCATCACGCAGCCTTCGGGGATGAGGGTTCCGTCATTGAGGTTCTGCATCGAGGCGGGGCCGACCTGAATGCCAGAAACAAACGTAGACAGACACCCCTGCACATCGCTGTCAACAAGGGCCACCTACAAGTGGTGAAGACTTTGCTTGACTTTGGCTGCCACCCTAGTCTGCAGGACTCAGAGGGAGACACACCTTTGCATGATGCCATCAGTAAGAAGAGGGATGACATGCTCTCTGTGCTTCTGGAAGCAGGTGCAGATGTCACAATTACCAACAATAATGGCTTCAACGCGCTTCACCACGCAGCTCTGCGAGGGAACCCCAGGTATGACTTCGTAACTTGGGCTGAAATTGGGCTTCTGGTCAGTGAGAATTATGCAGCTCTGAATTTATTAAATGGTTTCAGCTCATATCTGGGGCCTGTATAGGACAAATTTTTATGTATCTAAATACAAA

Function

symbol description
mib1 Enables identical protein binding activity and ubiquitin-protein transferase activity. Acts upstream of or within several processes, including animal organ development; nervous system development; and tube morphogenesis. Located in endocytic vesicle and perinuclear region of cytoplasm. Part of protein-containing complex. Is expressed in nervous system; neural tube; and pectoral fin. Used to study epilepsy. Human ortholog(s) of this gene implicated in left ventricular noncompaction. Orthologous to human MIB1 (MIB E3 ubiquitin protein ligase 1).

GO:

id name namespace
GO:0021519 spinal cord association neuron specification biological_process

KEGG:

id description
K10645 MIB; E3 ubiquitin-protein ligase mind-bomb

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01382733_01410162.mRNA True 2191 mRNA 0.51 12 1382448 1410190

Neighbor

gene id symbol gene type direction distance location
CI01000003_01356590_01360272 NA coding upstream 22100 1356477 ~ 1360348 (+)
CI01000003_01329453_01342093 NA coding upstream 39776 1329453 ~ 1342672 (+)
CI01000003_01280201_01309764 NA coding upstream 72323 1279767 ~ 1310125 (+)
CI01000003_01258265_01259530 NA coding upstream 122897 1258265 ~ 1259551 (+)
CI01000003_01140472_01168860 NA coding upstream 213548 1140342 ~ 1168900 (+)
CI01000003_01430247_01451033 NA coding downstream 20057 1430247 ~ 1451626 (+)
CI01000003_01489211_01493471 GATA6 coding downstream 77647 1487837 ~ 1494025 (+)
CI01000003_01561017_01590804 CABLES1 coding downstream 150723 1560913 ~ 1590923 (+)
CI01000003_01728663_01761628 MMP16B, MMP16 coding downstream 318262 1728452 ~ 1762479 (+)
CI01000003_01797491_01803265 PTER coding downstream 386431 1796621 ~ 1806332 (+)
G23223 NA non-coding upstream 4093 1378059 ~ 1378355 (+)
G23217 NA non-coding upstream 36874 1345273 ~ 1345574 (+)
G23175 NA non-coding upstream 54573 1327563 ~ 1327875 (+)
G23056 NA non-coding upstream 159786 1176830 ~ 1222662 (+)
G23039 NA non-coding upstream 311940 1070290 ~ 1070508 (+)
G23242 NA non-coding downstream 75992 1486182 ~ 1486398 (+)
G23244 NA non-coding downstream 94359 1504549 ~ 1504981 (+)
G23246 NA non-coding downstream 98060 1508250 ~ 1508470 (+)
G23251 NA non-coding downstream 131939 1542129 ~ 1542436 (+)
G23180 NA non-coding downstream 134331 1544521 ~ 1601182 (+)
G22578 NA other upstream 457200 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 987234 390622 ~ 408312 (+)
G22420 NA other upstream 1193009 179531 ~ 189439 (+)
CI01000003_01863421_01867859 NA other downstream 453078 1862854 ~ 1868137 (+)
G23870 NA other downstream 870470 2280660 ~ 2285641 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location