CI01000003_01430247_01451033


Basic Information

Item Value
gene id CI01000003_01430247_01451033
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1430247 ~ 1451626 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000003_01430247_01451033.mRNA
ATGGCTTACAAAAACATGAAGAAAAAAGGCGGAGGATGGGGAACCAGGACCAGGGTTGAGAACCACTGTACTTACAGTACGGTAGAGTTAGCCATTTCTCTTCCTAGTAACAGTGAGCTCCAGACCTATGACAAATTACCATGTGGCTACCGGAGACAACAGGCCTCGTTGGCGTACTCCTGTGGGACTTTCGTATCTCACAGTATGACCCAGTTCCATCGTGCTTTTCCTTCACCTTACTTCTCCTCCTGCCTTTTCCACTTTCTTTCAGTTCTACATTTGCCCCCATGTTCATTTTGGTGTTCAGACTGCTACTTCAGCCTCATTGTGTCCTCTGAGCCTTGTTCTTTACCTCTTAAATGGCAGCTGTTTACCTACCTCAGGTCGATATCAAAACCATATAAAGTAGTGCCAGCAAGCTGCATTAATATTAATGCCTGCCCATTTCCACCAACGTGGCAGGCAGCCTGTCAATCTATGCCGCATCTGCTCACCACTCACAATGCCAGCACCTTACTGACACCGATCCATCTTATTGTTGCCAACACAAGAGTGCACCAGTGCAAGCCATTTTCTGTACTTGCTACTACCTTTCTTGCTATGCGTGTGCTGCTGTCCAAACTGCCACGGCCATGGATAGTGGATGAGAAAAAGGATGATGGTTACACTGCGCTTCATCTGGCTGCCCTCAACAACCACGTGGAGGTGGCAGAGCTTCTAGTCCACCAGGGAAATGCTAATTTGGACATACAGAACGTTAACCAGCAGACGGCATTGCACCTTGCTGTCGAGCGTCAGCACACCCAGATAGTGCGACTCTTGGTGCGAGCTGAGGCAAAATTAGATGTGCAAGACAAGGACGGAGACACGCCACTGCACGAGGCCCTGCGTCACCACACTCTGTCCCAGCTGCGCCAACTTCAGGACATGCAGGACGTCAGCAAAGTGGAACCCTGGGAGCCCTCCAAAAACACATTAATCATGGGACTGGGCACTCAGGGGGCTGAGAAGAAGAGCGCAGCTTCTATTGCTTGCTTTTTGGCGGCCAATGGAGCTGACCTCACCATCCGTAATAAGAAGGGCCAGTCTCCTCTGGACCTGTGCCCTGACCCCAGCCTCTGCAAGGCTCTAGCTAAATGCCACAAAGAGAAGACCAGTGGGCAGGTTGGCTCCCGTAGCCCATCTCTAAACAGTAATAATGAAACTCTTGAGGAATGTATGGTGTGCTCGGATATGAAAAGGGACACGCTTTTTGGCCCCTGCGGTCATATCGCCACCTGCTCTCTCTGCTCGCCTCGTGTCAAGAAGTGTCTCATTTGCAAAGAACAGGTCCAGTCCAGAACCAAGATTGAGGAGTGTGTGGTTTGCTCTGACAAAAAGGCAGCCGTGCTCTTCCAGCCCTGCGGTCACATGTGCGCCTGTGAGAACTGTGCCAGCCTGATGAAAAAGTGTGTACAGTGTCGGGCAGTGGTGGAGCGCCGCACTCCCTTCGTTTTGTGCTGTGGAGGGAAAGGTATGGAGGATCCCACTGATGATGAGGACATTAGGAGCTCTAACTCAATGGCAGGGGGGTCGCAGGATCTTCTCCAGCCCAACAATCTGGCACTAAGTTGGTCCAGTGGAAATATCCCAGCCTTGCAGAGGGACAAAGACAACACAAATGTCAATGCAGATGTACAGAAGTTACAGCAGCAACTGCAGGATATCAAAGAGCAGACCATGTGCCCCGTGTGTCTGGATCGCCTAAAAAATATGATCTTCATGTGCGGTCACGGCACTTGTCAGCTCTGCGGAGACCGAATGAGCGAGTGCCCCATCTGCCGGAAGGCCATCGAACGTCGCATCCTGCTTTACTAGAGCGCCAGGCCATCGCAACCTCCCTGTTTTTCAGCCACAGTGTGTGCTGCTGCTCTCATAAGCACCTTTCTGTATCCGCAAGGTTCTCCGTGTCTCACGCTAAGCTATAAGAGACATCAGTGTTACACCATCCATCTTTATTTTATCTCTTAGGCTCAATATTTGTCCGGTTACCTTCAGTTTTCTGTTTGCTTGGATTATGTTCACCGCAAGGAGGAAGAAACTTGCTTAACTACTCCATCTTGCCATTTTATTCATGCAGGTGCCCACTTTTTTCTGCCGTGAGTAGTTCAGCACCACCTACAAGACATGAACTGACACTGTCAGGGTCTGCTAATGTTTCATATTTTATTATGTCATTGTATTATGCTTATATATCCTGATGCAAACAGTTGTATCTACAGTATCTGTGTAGGTTATGATACAGCATGGTGAATTTAGGACATGACTGAACTAAAAGAGTCCCGCTGAAGCTTTGGAAATTCATTTTGAAGTCTCATTTTGTGTGATGTAGCGTTCGGTTCCAAATAACGTGTAATGTAAAGCGTCTGCATTTACTGTCAGACTAAAGTTTGTCCTGTCCAAACAGTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000003_01430247_01451033.mRNA True 2450 mRNA 0.49 12 1430247 1451626

Neighbor

gene id symbol gene type direction distance location
CI01000003_01382733_01410162 MIB1 coding upstream 20057 1382448 ~ 1410190 (+)
CI01000003_01356590_01360272 NA coding upstream 69899 1356477 ~ 1360348 (+)
CI01000003_01329453_01342093 NA coding upstream 87575 1329453 ~ 1342672 (+)
CI01000003_01280201_01309764 NA coding upstream 120122 1279767 ~ 1310125 (+)
CI01000003_01258265_01259530 NA coding upstream 170696 1258265 ~ 1259551 (+)
CI01000003_01489211_01493471 GATA6 coding downstream 36211 1487837 ~ 1494025 (+)
CI01000003_01561017_01590804 CABLES1 coding downstream 109287 1560913 ~ 1590923 (+)
CI01000003_01728663_01761628 MMP16B, MMP16 coding downstream 276826 1728452 ~ 1762479 (+)
CI01000003_01797491_01803265 PTER coding downstream 344995 1796621 ~ 1806332 (+)
CI01000003_01863421_01867859 NA coding downstream 411228 1862854 ~ 1868137 (+)
G23223 NA non-coding upstream 51892 1378059 ~ 1378355 (+)
G23217 NA non-coding upstream 84673 1345273 ~ 1345574 (+)
G23175 NA non-coding upstream 102372 1327563 ~ 1327875 (+)
G23056 NA non-coding upstream 207585 1176830 ~ 1222662 (+)
G23039 NA non-coding upstream 359739 1070290 ~ 1070508 (+)
G23242 NA non-coding downstream 34556 1486182 ~ 1486398 (+)
G23244 NA non-coding downstream 52923 1504549 ~ 1504981 (+)
G23246 NA non-coding downstream 56624 1508250 ~ 1508470 (+)
G23251 NA non-coding downstream 90503 1542129 ~ 1542436 (+)
G23180 NA non-coding downstream 92895 1544521 ~ 1601182 (+)
G22578 NA other upstream 504999 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 1035033 390622 ~ 408312 (+)
G22420 NA other upstream 1240808 179531 ~ 189439 (+)
G23870 NA other downstream 829034 2280660 ~ 2285641 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location