G22524


Basic Information

Item Value
gene id G22524
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 468673 ~ 468902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU25409
GTATGTTGAAGTCCACCAGTGAGAGGTTGGTCAATGGAAGCACACAGCTCCCTTTGTAGTGTATGTGTGTGTGTGTGCGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTCTATGCTGATGGGAGCACTGCCACCGGGATAGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU25409 True 202 lncRNA 0.51 2 468673 468902

Neighbor

gene id symbol gene type direction distance location
CI01000003_00431473_00447759 MFN1A coding upstream 20723 431473 ~ 447950 (+)
CI01000003_00413809_00414819 NA coding upstream 53517 412590 ~ 415156 (+)
CI01000003_00390997_00406970 WDR33 coding upstream 60361 390622 ~ 408312 (+)
CI01000003_00380494_00385991 PROC, PROCA coding upstream 82582 380494 ~ 386091 (+)
CI01000003_00355244_00360638 SAGA coding upstream 107880 355244 ~ 360793 (+)
CI01000003_00538178_00547944 PHB2, PHB2A, PHB2B coding downstream 69183 538085 ~ 547983 (+)
CI01000003_00568546_00573291 NA coding downstream 99644 568546 ~ 573869 (+)
CI01000003_00596144_00607951 NA coding downstream 127242 596144 ~ 608038 (+)
CI01000003_00644619_00663181 NA coding downstream 174753 643655 ~ 663280 (+)
CI01000003_00665762_00716862 DLG1, DLG1L coding downstream 196059 664961 ~ 717379 (+)
G22490 NA non-coding upstream 17572 450548 ~ 451101 (+)
G22488 NA non-coding upstream 57061 410563 ~ 411612 (+)
G22506 NA non-coding upstream 95854 372551 ~ 372819 (+)
G22501 NA non-coding upstream 111859 356555 ~ 356814 (+)
G22544 NA non-coding downstream 53247 522149 ~ 522653 (+)
G22551 NA non-coding downstream 92018 560920 ~ 561612 (+)
G22585 NA non-coding downstream 113166 582068 ~ 582405 (+)
G22583 NA non-coding downstream 275779 744681 ~ 744938 (+)
G22574 NA non-coding downstream 348896 817798 ~ 819540 (+)
G22420 NA other upstream 279234 179531 ~ 189439 (+)
G22578 NA other downstream 455901 924803 ~ 925248 (+)
CI01000003_01863421_01867859 NA other downstream 1394366 1862854 ~ 1868137 (+)
G23870 NA other downstream 1811758 2280660 ~ 2285641 (+)

Expression


Co-expression Network