G23326


Basic Information

Item Value
gene id G23326
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1854305 ~ 1855168 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU26325
ACACCACTACATTAATATTAACACCACTAATAAACTAATTTATTCACCAGTGTCATTAAGTGAACATTAACATACACAGCTTTCAAAAATGATGTTATGTTGGTCCTTAATACCAAACTCACTTTTACATTCATGTTCAGTAACAATAACAAATCAAAGGTAGAATTTGGTATCACAGTGTGAATGTTTTACATAAACAGTCATACAGTACAGTCAGTAAGTGCTTGTGTGTCCATATTTTGATTCACAGAATCTCATTTGTTTAAATCCTGTAATTTTACTGTTATTCTGGCTCCTAAGGAAGTATGCAGTAAGAACACAAAATGGGACTGGCAACACTTAAAATAAGGTTCAATTAGTTAACATTAATGCAAACTACATTAAACATAAACACTCTTTTAATCTACTACAAATCTGCTATTGTTCATTTCAGTATCTACTACTATATTTTGAACATCTTAAAAAAAGTTTAAAGTATAAATGAATGTAAGTTTATTGTACTTTATTGTGAACAAACATTAACAATTAACAACACTTTTATTAGTAGATGCAAAACTTAACATTCTAACATTATAATGATCATTACATTAAAGGTATTAATAAATGGTGCACAATTGCTGCTCATGTTTAGTTTGATGATGTCTAATGCTAACAAATTGACCCCTGTTGTAAAGTGTTACCAAAAAAATCTCCTTTTGATTAATATGCAACCAGGCACAAGCTTAAAGGGATAGTTCACAGAAAAAAGTTTACTCACCCATATGTTTCTCCAAACCCGTAAGACTTTCATTCAACTTCGGAACACAAATGAGGATATATTAAATAAAATCCGAGCGTCCATAGACAGCTAAGCAACTCCCACTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU26325 True 864 lncRNA 0.43 1 1854305 1855168

Neighbor

gene id symbol gene type direction distance location
CI01000003_01797491_01803265 PTER coding upstream 49921 1796621 ~ 1806332 (+)
CI01000003_01728663_01761628 MMP16B, MMP16 coding upstream 91826 1728452 ~ 1762479 (+)
CI01000003_01561017_01590804 CABLES1 coding upstream 263382 1560913 ~ 1590923 (+)
CI01000003_01489211_01493471 GATA6 coding upstream 360280 1487837 ~ 1494025 (+)
CI01000003_01430247_01451033 NA coding upstream 402679 1430247 ~ 1451626 (+)
CI01000003_01863421_01867859 NA coding downstream 7686 1862854 ~ 1868137 (+)
CI01000003_01889537_01891879 NA coding downstream 34330 1889498 ~ 1892071 (+)
CI01000003_01893593_01901539 SCHIP1 coding downstream 38425 1893593 ~ 1901769 (+)
CI01000003_01907347_01909263 NA coding downstream 51954 1907122 ~ 1909600 (+)
CI01000003_01921110_01928830 TXNDC12 coding downstream 65669 1920837 ~ 1929621 (+)
G23346 NA non-coding upstream 2627 1851281 ~ 1851678 (+)
G23318 NA non-coding upstream 5236 1839845 ~ 1849069 (+)
G23325 NA non-coding upstream 19502 1833479 ~ 1834803 (+)
G23344 NA non-coding upstream 22539 1831507 ~ 1831766 (+)
G23343 NA non-coding upstream 22861 1830478 ~ 1831444 (+)
G23322 NA non-coding downstream 709 1855877 ~ 1857501 (+)
G23323 NA non-coding downstream 3320 1858488 ~ 1859214 (+)
G23379 NA non-coding downstream 98169 1953337 ~ 1953707 (+)
G23383 NA non-coding downstream 123861 1979029 ~ 1979593 (+)
G23356 NA non-coding downstream 174364 2029532 ~ 2047851 (+)
G22578 NA other upstream 929057 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 1459091 390622 ~ 408312 (+)
G22420 NA other upstream 1664866 179531 ~ 189439 (+)
G23870 NA other downstream 425492 2280660 ~ 2285641 (+)

Expression


Co-expression Network