G23322


Basic Information

Item Value
gene id G23322
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000003
NCBI id null
chromosome length 2831192
location 1855877 ~ 1857501 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU26321
GGAAACACAAAAGAAGATATTTGGTAAAATGTCTTGGTGAGTTTTTCCATACAAAAAAAGTTTGGATAAAAAAACAAAAAAAACAGCTGAAACATTTTTCAAAATGTCTTCTTTAGCATTTTTCAGAAGAAACAAAGTAAAACAGGTTATGCAACAATGTAGGTGAGAAAATAATGACATAACTTTCACTTTTTGATGAATTATCCCTTTAATGCCTGAACGGTTCATGTTTACAAATCCAGTAGGTCTGGTACCTGGTTCAGTATTCCATACAGGAGCAAATCTATGTCCTAAAAACCAGTTGCAGCAGTAATCGCAGAGAGAGTCTGTGTAGCCACCGTACGCAAGGCAAATGTTGGCACAGAGAGATCCATGAGGAGGAAGAGCTGGTGTTGGGGACTCTGCAGGCCATAACACTTACACTCATCAGTCACAAGGTAGCACTGCACAGGGACGTGGGTAAATCCCTGAGAAAAATCCTCCGAGGTAGGTGAGGCTGGTGAGACTGATGTCTCCTGCGAGGTAAAATATCGGGTCATGGCAAATGTGTAAAAAAGGCGAAGGAGCTCCAAGCGCCTTTCTGATGAAAGAAGAGGCACAGCCTCCACAGGAGCACCACCACGAACCCTAGGGCAGACGGTGACCGCACGTCGAGATTCACGGTTGATGAGCAAAAGAGCCTGGACGTCCCAGCGAAGACTCACAGACGGAGGAAGAGTGGAACGGTCGGCCTGCTCCATGCAGATGCGTAGATTCTCCACCAAAGTAGACCAAAAACGACTCACAAGCTCATTCTCCGCCTTGTACAGAGAGGGTTTGGGGCCACAAAGGATGCACACGTGAACCCCAGGAAGCAGTTGGAAACTGAGCAAGCGAATGGCGACGGTGGGACTGCCTTGGGGCAGGAAGACCGGGTAGTCACATGACGATGCACTAGAAAGTGAGTGCACCAGGATTGAGAGCACAACAACTTCCTGGGAAGTCAGTCGAGACCACCATTTCTCCGTGGCCTGTGCCACACGTCCGTACACTAGCAGGCAGCCAAATTCGCTTTCCGCCGCTTGGGCGAAGGAGTCTAGAGCTTCCTGAAGCAAGCCGGAGTTGGAGGGAAGCAAGCAGTCAGCACATTGTGTCAGATCTCCCATAAAGCCCTGATCGTCACTGACGCGCTCCAAGAGCATGTCGATCAGGCGGTAGCAAGAGCGCAACTCTCGTTTTAACCGCTCCACGTTGCGTATGTTTGCCAGCTCGTCCTGTCCCAGGACCATGACCATGCAGTTCCACACGTTCTCCAGCAGGCGGCGCAACTGCAGCTCACTGATGGCGGAGCCCCCGCTGCCACTCACCGCAATCAGCATCAGGCTCTCCTGAAAGACCCCCCAAACCACACGGCTGCCTCGATCTGTCTCACAGCTCGATAACTGAGCCCCGTGGCCGGTACCAAACATATGGACACCGTTTAGGGAGCCGATGATGGAAAAGGGAAGCTGCTTGGTGGAGCCTCGTGAGAACAGAGGGACCCCACTGGAGGCTGTGAGGCACAGCAGCTGGAGGGTCTCTGCTTGAAGCATAGTGAGTTCAGACTGGGCTGGAGAGTGTCTCTAAACATCAATCAGTGATGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU26321 True 1625 lncRNA 0.51 1 1855877 1857501

Neighbor

gene id symbol gene type direction distance location
CI01000003_01797491_01803265 PTER coding upstream 51493 1796621 ~ 1806332 (+)
CI01000003_01728663_01761628 MMP16B, MMP16 coding upstream 93398 1728452 ~ 1762479 (+)
CI01000003_01561017_01590804 CABLES1 coding upstream 264954 1560913 ~ 1590923 (+)
CI01000003_01489211_01493471 GATA6 coding upstream 361852 1487837 ~ 1494025 (+)
CI01000003_01430247_01451033 NA coding upstream 404251 1430247 ~ 1451626 (+)
CI01000003_01863421_01867859 NA coding downstream 5353 1862854 ~ 1868137 (+)
CI01000003_01889537_01891879 NA coding downstream 31997 1889498 ~ 1892071 (+)
CI01000003_01893593_01901539 SCHIP1 coding downstream 36092 1893593 ~ 1901769 (+)
CI01000003_01907347_01909263 NA coding downstream 49621 1907122 ~ 1909600 (+)
CI01000003_01921110_01928830 TXNDC12 coding downstream 63336 1920837 ~ 1929621 (+)
G23326 NA non-coding upstream 709 1854305 ~ 1855168 (+)
G23346 NA non-coding upstream 4199 1851281 ~ 1851678 (+)
G23318 NA non-coding upstream 6808 1839845 ~ 1849069 (+)
G23325 NA non-coding upstream 21074 1833479 ~ 1834803 (+)
G23344 NA non-coding upstream 24111 1831507 ~ 1831766 (+)
G23323 NA non-coding downstream 987 1858488 ~ 1859214 (+)
G23379 NA non-coding downstream 95836 1953337 ~ 1953707 (+)
G23383 NA non-coding downstream 121528 1979029 ~ 1979593 (+)
G23356 NA non-coding downstream 172031 2029532 ~ 2047851 (+)
G23770 NA non-coding downstream 281787 2139288 ~ 2139544 (+)
G22578 NA other upstream 930629 924803 ~ 925248 (+)
CI01000003_00390997_00406970 WDR33 other upstream 1460663 390622 ~ 408312 (+)
G22420 NA other upstream 1666438 179531 ~ 189439 (+)
G23870 NA other downstream 423159 2280660 ~ 2285641 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015152 fuz coding NC_007113.7 CM002886.2 3516913 ~ 3519707 (+)