CI01000004_00291677_00292816


Basic Information

Item Value
gene id CI01000004_00291677_00292816
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 291342 ~ 292826 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_00291677_00292816.mRNA
GAATAAAAAGTTGAGTCACATCACGGAATGTTCAGGCATCTGGGATATTTTTGTGATCACGGCCACTTCTTCATCTACCTCACTTTCTCACAACATTTTTTTGGTCGTTGCTGTATAAGAAATGTCAGCTGATGTTGTCATGTACGTTTCTCTTACAGACTTGTCATGACGAGGTCTTCAACATCAATGGCAGCTGAGCAATCACAATACCAGGCTATTTCCTTGTCTCATATTTCGAACCCAGACTTGGACACGTTTTGAAGGCCATCATGACTCTAGGTGAAACATAGCCAGGAATCTCGTGAATCGAAACTGGAGCCAAAGCTAAAGGAGTCATGATGCTTCTCAAAATGCCTAGATTCAAAAAATACCAACTACGGCTAATATCACTGTGCTTTAGTAGCTTACTGTTCATGGCGTACTGGGAAAAAATTGACAATAACATTGTAACTCATGTAATGTCTTTCTCGTACCGCTACCTTCTCAATAGCTTCACGTTCATTAACGCAAGCTTTAGAGCCAATCCTGAAGACGCTATAAAGTTCAGCAATCGCAGATACCTCATAAACCATGAGAGTAAGTGTGACGAAAAGGATGTTCTGCTCCTGCTCTTTGTGAAAAGCTCCTCTGAGAACTTTGAGAGAAGACAGGCCATTCGTTCTACTTGGGGTAATGAGACGTACATTGAAAGGACGTTGAGTGTTACTGTAAGGGTGCTGTTTGCTCTCGGCCTCCATCCTGAACCAGCGTACAGAAGCAAACTTAAGATGCAACTGTTCTTTGAGGACCAAAGATATCATGACCTCATCCAGCAGGACTTCATAGACACCTTCCACAATCTTACTCTGAAGCTACTTTTGCAGCTTGGCTGGAAAGAAACCTACTGCCGCCATGCCCAGTTCCTCATGTCTACAGACGATGATGTGTTTGTCCACATTCACAACTTAATTCATTACTTGCAAGGGATCGGCCGCAGTAACAGCAAAGATCTTTGGATAGGAAGAGTGCACCGCGGTTCTCCACCCAACCGAGACAAAGAGAGCAAGTACTACGTGTCCCGAGACATGTACCCGTGGTTGGCTTACCCAGATTACACCCCTGGATCTGGGTATGTCCTCTCTAGGGATGTAGTTACCAGAATCTATAAAGCTTCACTCACCATAAACCCTTCCTTTCACATTGATGACGTCTTTCTCGGAATCTGTGCTAAAGTGATGGACATTGTGCCCAAGGATCATTTGTTCTTCTCGGGAGAAGGAAAAGCACCTTATCATAGTTGTATCTACAATCAGATGATGACCTCCCATGGACACATCAGCGATATTCGCGAAATGTGGAAGCGTGTAACAGAGGCTGAAGTTGATCAGATGCCCTCAGGACTGAGTTGGAGGCTCTACTGTACTGTCATGAAAGTGAGGCTCCTATGTGTACCATTTATTTCAAACTCTTACCCATGTAAGGCAGCTTTTTTTTGAACATGAGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_00291677_00292816.mRNA True 1485 mRNA 0.44 1 291342 292826

Neighbor

gene id symbol gene type direction distance location
CI01000004_00266091_00278846 TBL1XR1A, TBL1XR1B, TBL1XR1.L, TBL1XR1 coding upstream 12496 266091 ~ 278846 (+)
CI01000004_00226186_00234811 NA coding upstream 55290 226186 ~ 236052 (+)
CI01000004_00150251_00175611 EPHB3, EPHB3A coding upstream 114683 150251 ~ 176659 (+)
CI01000004_00098017_00119297 PLS1 coding upstream 171724 98017 ~ 119618 (+)
CI01000004_00311036_00314134 DCUN1D1, DCNL1 coding downstream 16978 309804 ~ 314134 (+)
CI01000004_00318181_00339002 CCDC39 coding downstream 24408 317234 ~ 340020 (+)
CI01000004_00407881_00409797 NA coding downstream 115055 407881 ~ 410139 (+)
CI01000004_00467911_00469949 AGRP2 coding downstream 174976 467802 ~ 471846 (+)
CI01000004_00544278_00547753 NA coding downstream 250107 542933 ~ 547983 (+)
G24339 NA non-coding upstream 5264 285867 ~ 286078 (+)
G24279 NA non-coding upstream 166844 117912 ~ 124498 (+)
G24251 NA non-coding upstream 199052 83666 ~ 92290 (+)
G24229 NA non-coding upstream 255579 26184 ~ 35763 (+)
G24293 NA non-coding downstream 47309 340135 ~ 344681 (+)
G24347 NA non-coding downstream 63276 356102 ~ 356397 (+)
G24292 NA non-coding downstream 84284 377110 ~ 378111 (+)
G24358 NA non-coding downstream 131445 424271 ~ 424487 (+)
G24359 NA non-coding downstream 133883 426709 ~ 426910 (+)
CI01000004_01332533_01345585 SCP2 other downstream 1039639 1331583 ~ 1346008 (+)
G25187 NA other downstream 1311716 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 1571333 1867166 ~ 1868986 (+)
G25329 NA other downstream 1790231 2083057 ~ 2085707 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016153 b3gnt5b coding NC_007113.7 CM002886.2 7749394 ~ 7757273 (-)