CI01000004_00318181_00339002 (CCDC39)


Basic Information

Item Value
gene id CI01000004_00318181_00339002
gene name CCDC39
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 317234 ~ 340020 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_00318181_00339002.mRNA
TTATAAAACAGAGTAGCTGATGTCTTGAGAGCCAGTCACATTTGCTTTCTTTTTTTTTTTTTTGTGTTTTATTGTGACTTAATGTACTTTTTTTGTTGATATCCAGACAGTGATTTCACTTTGCTTGTTTGGTTTTGATTAAATCGATAGGTCATAATAACTGAGAATATTATATTTTACAATCCTAGAAATAATATTAATTTGAACATTACCTCAGTTTTCATTAATTAATGACTCCATCTGATGTATTGATATGCTGTGTTTGCAGTTCATTCAGCACTTTGATAAGTCACATAATCCATACAATAAAATCAGGTTATAGTTGATGAATAAAGTCAGATGGCCTTTTTTTGTGTGTGTATGTGTGGTTGTCAGCGAATGTTTACACACACACAGTCTAACTTCCTTTAATATGCCTTAAAATATTAAGGGATAGCTCATAAAAACTATCAAAAAAAAAAAAGTGAAAATTCTGTCACCATTCACTCACCCTCATGTTGTTCCAAACCTTTATGACTTTAAATCTTTTGCGGGCGTATAAAATAAGATATAAACTCGCAATTCCGAGAAAAAAAAGTAACATTTTGCAATTCGGACTTTTTTTCCTCAGAATTGCGTGATATAAACTCGCAAAAAATCCTAAGAATTGGACTTTATAAGTTGCAATTGCCAGTTTAAATCTGTTGAAATCTCGCGTTTATATCTTAACCTGAGATAAAGAATCACAAATTCATAATTAAAATAGTATTTCTGCTGTATTAGGCTACTTCTCAAAAGAGAAGCGTTTGGCGTCACCTATAGGTTGAATGCGGCATATTGATAGTTAGCGTCGTTGCTATGAAACGAATCTTGAAAACACAACGTTAAGCCACTGCATTCGTAAACGTGTGATAATCTCATCGAGCCGTTTGTGTTTTGATCCTGAACGTCTCTGAAAACAGATCAAAATGTCTAACGCTCTGTTAGCAGAGGTTGGCTGGGACGCGGGTTTCGCCCTCCCTGTAGCTAATGCAGAGAATAAAGCATTAGAGGAGGAGCTTCAAAGGAAGCAAAAGGAGCAATTAAATCTTGAGAACAAACTGAATAAATACAAAGATGTTATAAATGCTTTGACTGAACATCTCAAAAATCTGAAACAAGAGCTTTCTCACACTCAGGCTTTGTGCAAAGCCAGAGAGAAGGAGACTGAATCTGAGGAGCATTTCAGAGCCCTGGCGGAGCGAGAGGCAGGCCGGTTGAAGCAGGAGATCACTGAGCTGGAGAATGAACTAAAAACACTGAATGAGAAGAAGAACGCACAAGAGAACAGCATCTTTAAAGCCACTCAGAAGCTTGAGGAACTGAAGAGTCAGCTGAACTGGGATCAGCAGACCCTGGAGGCCTGGCTGCAGGAATCAGCACACAAGGATGAAGACACCATGGCCATCATCAAGTACGCCAAGCAAGATGAGAGCAGGATTCGAGAGCTGACACTGAACATTGAGAAGTTGACACTTGAAGCCAACCAGAAAAGAAAGACCTTGAACAGTGAAATCACTGAATCAGGTACAGCACAGATCGCTTTGGACAAAACAGCCGAAAGCTTTCGTCAGGCTCACATTGAGAGGCAAGAGATGATCAACCAGTGGGAGAACACTATTGAACAAATGAGGAAAAGAGACCAGGAGATACAGCAGTGTGCCATGTTGCAAGCAGAGGTGAACCAAGTGATAAGAGAGAAGAATGATTTGATCAAGGAGAGGAAGGACTTCATGGAGCGTGAGATAGAGAACAATAAAGAGCTGGAGAGGAACATAGGCACAACTGAACGTCAGGCACTTCGACTCAGACAGCAGCTCCAGGAAGAGGAGAGGAATCACAGACGTCTGCAGGATGAGGTGGAGGTTCTGAAGGGAACTTTAGACCGAACAGCCACAGATGTGGAGACCACCAGATCTCAGTTAACCAGCATGAAAAAGAACATTCAGGACAAAACAGCAAAGGTTGAAGAAGTAAAGCTGCATAATGCTGCTCTGAAGGAGAAGCTGCAAGTGGTGATGGAGGCGGTGTTGGATGGTGAAGAGCAAGCAGCACAGATGGAGCAACTGCACAAAGAACAGGAACAGAACATCAAAGACTTTCAGATCCAGATGCTGGAGAGGAAGACTTTACACTTGCAGGGGAAGGTGAACACAGAGGAGAAGAAAGCTCTGGAGAAGAAGGCTTCTGATCTGGCTGAAGCTCTCGAGGAGAAGAAGAGGACGGCCGCCACCCTCAACACACAGCTAAAGAAACTCCAGGATGATATCCGCTGCATTAAGAAAGACGCAGAGAAGAGCGAAGCAGAGAAGAGAGATCTGACCTCCAAGATCCAGGAGATGGAACTCTTCATTGACACCTCTGAGAAAGACCAGAAAAAACTCAGGCTCAAAAAACAGGACACCATGGTGGAGAAAGGTCTCCTGAAGATGGAGGTGCAGCGGCTGAGAGACCTGCTGTATGACAGAGCAGATGGAGTACTGACTCTGGAGAAGAGACGTCTGCAGCTGCAAGCGGCCATGAAAGAAAGAGAGGAGGAGATCCGTGTGCACCGAGAGATGCTCGTTAAACAGGTCAAGCTCACTGAACAAGAGAGACAAGGGCTCAGTACTGCGGTGAACGAGAGAATGTTCAAAATTGACAAGATGAGGAAGAGGTATGAGATCCTGACTGTTGCCATGGCTGCACCAGAGGGAGAGGAGGAGAAATCCCAGGCCTACTTCATCATAAAGGCAGCTCAAGAGAAAGAAGAACTCCAGCGTCAGGGAGATGATTTGGATGCCAAAATCCGCAAGGCAGAGAAAGAGATCCACGCTTTGGAGAACACCCTGCATGTTGTTAACAACTGCAATACAACCTACCGCAAAGCCCTGACCAAAGTCACGGAGTCCAGTCCTGCACACCAGGAGAAACTGAAGCTGGAGGAGCAGAGACGAGCAGCTGAGGACAAGTACAAATTTAAGAAACGGCAAATCCGAGAACTGCAGGAGGATGTTGAAAGCATGTCCAGGACATTGGAGGGTCTTCTTCAAGAGGAAGCCGTTCAGAACGAGAGCATTGAGAGGACCCAAGCACATGTGCTCTCTCTCAACAAAGACATCCTCTCTCAGGAGGAGAAACTCAGTAGAGCCGTCAAACAGTGTGCCAAATATACCAGGGAAATTCGGTCTGCTAAGAACACCAAAGAGAAGACGTTTGAGGAACGCGACATAGAGCTACGAGAACTCAGAGACTTAAATAAAAGCCTAAATAAGATGCTCCTAGAAGCCATAGAGGAGAATCCTGACCTGGCATCTGCATTACAGATACGTTTTATGCAGGCTGGTCTGTCGCTGCCCTCTCCTGCTTCCACTCCTTCCAGCCGTCTGAGCTCAAAGATCAACTCAGCCCGCAGTTCTGCTTCATTCCATCGGTATTCACATAATCATGCTTTTATCTATTACGATTTATATTCCACATTGAAGACAGTGGATCTGGGATTGGGCCTCTCCGTCACATCCCCGCAAGGATCTCGGCTACCCAGCGCTGACAGCAGCAGCAGGAGCAGCAAATGCAAGAGCCCTTAGACAGATCCAGACCCCAGTCTCTCTGAGGAACAGTGTGTCTCTGTCAACCAGGAAGTTATTGTTTTTAATTATACCACTGTTCTTGTTATTCAAGTTTTGCCTCAATGTTTAGTTTAGTCAATTCAATGTTATCTTTAAAATCATTTTAGCTGTTTAAATTTGACTTTTATCATTGTGGGTGTGTGTGGGTGTGTTTTTTTTTTTTTTTCCTAGAAATTAGTTATTACTTCAGATTACTTCAGGAAACATAGTTTGATTATATACTACCAGTAAAAGTTAATTATAGTTTACCGGTATTATATAATCATAGTTTGATTATATAATACCGGTAAAAAATAATAAAAATTTTTATATGTTTTTGAAAGAAGTCTCTTGTGCTCACCAAGGATGCATTTATTTTATATTTTGTATTTTGTATTTTTTTATATTAAAAATACAGCAAGAATAGCAAAATTGTGAAATAAAATTACAATTTAAAAGAACCGTTTTCTATTTTAATATATGGTAAAATGTTATTTATTCCTGTGATGGTAAAGCTGAATTTTCAGCATCATTACTCCAGTCCTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTGCTGCTCAGTTATTATTTTATTATTTATTGGTCCATCAATAATCAGCATATTAGAATGATTTCTGAAGGGTCATGTGACACTGAAGGTTGGAGTAATGATGCTAAAAAAAATTCAGCTTTGCATCACAGGAATACTTTATATAAAAACAGTTCTTTTAATTTGTAATAATATTTTACATTATTACTATTTTTACTATATTTTTCATAAAATAAATTCAACCTTGGTGAGCATAAGAAACTTCTTTCAAAAACATTAAAAAGTCTTAATTATCCCAAATTTTGACCGGTAGTGTAGACTTTTTTTTTTTTTTCACAGAACTTCTTTCCTTTGGAATTACAATCGCAGGTCTTGTTTAATTTCAGTACTTACATATATGATTGTTATGTGGCAGCAACATAGAAAGAAACA

Function

symbol description
ccdc39 Involved in cilium-dependent cell motility and epithelial cilium movement involved in determination of left/right asymmetry. Acts upstream of or within determination of left/right symmetry. Located in extracellular region. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 14. Orthologous to human CCDC39 (coiled-coil domain containing 39).

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_00318181_00339002.mRNA True 4602 mRNA 0.40 19 317234 340020

Neighbor

gene id symbol gene type direction distance location
CI01000004_00311036_00314134 DCUN1D1, DCNL1 coding upstream 3100 309804 ~ 314134 (+)
CI01000004_00291677_00292816 NA coding upstream 24408 291342 ~ 292826 (+)
CI01000004_00266091_00278846 TBL1XR1A, TBL1XR1B, TBL1XR1.L, TBL1XR1 coding upstream 38388 266091 ~ 278846 (+)
CI01000004_00226186_00234811 NA coding upstream 81182 226186 ~ 236052 (+)
CI01000004_00150251_00175611 EPHB3, EPHB3A coding upstream 140575 150251 ~ 176659 (+)
CI01000004_00407881_00409797 NA coding downstream 67861 407881 ~ 410139 (+)
CI01000004_00467911_00469949 AGRP2 coding downstream 127782 467802 ~ 471846 (+)
CI01000004_00544278_00547753 NA coding downstream 202913 542933 ~ 547983 (+)
CI01000004_00584081_00605137 RC3H1, RC3H1B coding downstream 244061 584081 ~ 605802 (+)
CI01000004_00617015_00621040 EXTL2 coding downstream 276995 617015 ~ 621258 (+)
G24339 NA non-coding upstream 31156 285867 ~ 286078 (+)
G24279 NA non-coding upstream 192736 117912 ~ 124498 (+)
G24251 NA non-coding upstream 224944 83666 ~ 92290 (+)
G24229 NA non-coding upstream 281471 26184 ~ 35763 (+)
G24293 NA non-coding downstream 115 340135 ~ 344681 (+)
G24347 NA non-coding downstream 16082 356102 ~ 356397 (+)
G24292 NA non-coding downstream 37090 377110 ~ 378111 (+)
G24358 NA non-coding downstream 84251 424271 ~ 424487 (+)
G24359 NA non-coding downstream 86689 426709 ~ 426910 (+)
CI01000004_01332533_01345585 SCP2 other downstream 992445 1331583 ~ 1346008 (+)
G25187 NA other downstream 1264522 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 1524139 1867166 ~ 1868986 (+)
G25329 NA other downstream 1743037 2083057 ~ 2085707 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016151 CCDC39 coding NC_007113.7 CM002886.2 7668573 ~ 7696503 (-)