CI01000004_00467911_00469949 (AGRP2)


Basic Information

Item Value
gene id CI01000004_00467911_00469949
gene name AGRP2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 467802 ~ 471846 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_00467911_00469949.mRNA
CTTTATAAACGCTGCGAATGGTCTTCAACACAGTCCTCACTTGTTGAGTGATCTCTGAGGACAGTCTAACGCTAACCCGACACACCTAAAGACTCCATTTGATCGGCAAATGACGACGGCAATGATGAAAGGATTTGTGCTGTCGATCTGCTTATTCTTCACAGTTGTTCAGTCCATCACTTGTGAAGCGAACAGGATAGAAGCGCGCAAAAAGCACGAAAACGACGTGGCGCACCACAGCTCTGCCATAACAACAGGAGTGTGGAATCAGGAGAAACCAAAAAGACTCTTTGCCAGGACTCGCTATCTGTCTCAGCAGAGACATCATGTGGTGAGACCTAAGCCCAGGCCTGAGGCCGTTTCTCCAGCCCAGACTCCAGCGCGGCGCTGTGCCGGTCTGATGGAGAGCTGCTCCTCGCTCACTCCCTGCTGTGATCCATGTGCTTCCTGCCACTGCAGGCTCTTCAACACCATCTGCCACTGCTGGAGACTGGGACACCTCTGCCCCAAGAAGACCTAATGACCTTAAACAAACACACACACACACACACACGCACACACGCACACACACGTATATATCGGTGGTTCTCGGTTGCTTTTACTTCAGCATTGCTCATCCAATACTGTTTATCAAACAAAAAGAAAGAAAACTCA
>TU27514
TGTTGAGTGATCTCTGAGGACAGTCTAACGCTAACCCGACACACCTAAAGACTCCATTTGATCGGCAAATGACGACGGCAATGATGAAAGGATTTGTGCTGTCGATCTGCTTATTCTTCACAGTTGTTCAGTCCATCACTTGTGAAGCGAACAGGATAGAAGCGCGCAAAAAGCACGAAAACGACGTGGCGCACCACAGCTCTGCCATAACAACAGGAGTGTGGAATCAGGAGAAACCAAAAAGACTCTTTGCCAGGACTCGCTATCTGTCTCAGCAGAGACATCATGTGGTGAGACCTAAGCCCAGGCCTGAGGCCGTTTCTCCAGCCCAGACTCCAGCGCGGCGCTGTGCCGGTCTGATGGAGAGCTGCTCCTCGCTCACTCCCTGCTGTGATCCATGTGCTTCCTGCCACTGCAGGCTCTTCAACACCATCTGCCACTGCTGGAGACTGGGACACCTCTGCCCCAAGAAGACCTAATGACCTTAAACAAACACACACACACACACACACGCACACACGCACACACACGTATATATCGGTGGTTCTCGGTTGCTTTTACTTCAGCATTGCTCATCCAATACTGTTTATCAAACAAAAAGAAAGAAAACTCATTAAAATTGAGTTTAGACATTTAGTTTCTAAATATTTCTTGAAGTTTGATGGTATCTTGCTATCAGTTTCCAAAAATTCACCACACAAAACCAGTTTTCTTCATGGTTTTTGATGATGACGGCATCTGTATAATTTGACAAGCTTCTACCAAGATTAATTTGTGCCAAAATACTGAAGCGTTCGATTACAGCCTTTGACTTTTAAAGGTTAGTTCACCCAAAAATTTTAATTCTGTCATTAATTACTCACCCTCATGTCGTTCCACATCTGTAAGACCTTCGTTCATCTTCGGAACACAAAAAAAATAATGATAAAATGAAGCTTCATGAAGTTTTGAAGTTTTACGAATCTTTTGTTTCGAATCAGTGGTTCGGAGCATGTATTAAACTGCCAAAGTCACACCCCCCAGTGGTGAACCACTGAAATTTCAACACACATTTTACATAATGAAGCCTCGTTTACTGAAATCACGTGACTTTGACAGTTTGATACACACTCCAAACCACTGATTCAAAACAAAAGATTCATAAAACTTTGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCATCACTAGATGTTGTTGAATAGTCTTTTTTTTTTTTTTTTTTGCCGCACAAAAAGTATTCTCGTCGCTTCATAACATTAAGTTTGAACCACTGTAGTCACATGAACTGTTTTAAATACATCTTTAGTAGCTTTCTGGGCATTGAAAGTGTGAATTGTCTTGCTGGCAATGCAGGCCTCACTGAGCAATCGGATTTTATCAAAAATATCTTAATTTGTGTTCTGAAGATGAATGAAGGTCTTACGGATGTGGAACGACATGAGGGTGAGTTATTAATGATAGAGTTTTAATTTTTGGGTGAACTAACCCTTTAAAGGAATATTCCATTTTCAATACAACTTGCATAAAGTTGATCACCACAAAAATGATTTTGACTCGTCCCTCGTTTCCTTTAAAACAAGCAGAAATAGAGGTTTCAGTGAGGTTAATTTTATTGTTTTGCTCATTATTAGTTAACGTTAATTAATGCAATAACTAATATTAATAGGACTTTACTGTAAAGTGTTACCAGCGTTTTTTGTATTTTTTATTTAGCATTTAGCAAATGTTTGTTCAGAACAGACCTCCAGATCCACCATAAGAGAACCACAGCTATATATCACACAAGTAGCTGTGCACCATCAGGATTTACACCTGTACTTCTACACACTCTGATTCTACTATGTAGCATGCCATGGATCATACATGACATTTAACTGACTGTACAGTGAATATTTAACTACCACATGACTCGAGTTCTTTGCTCTCTATTTGCATCATGATGACACTATGTGACTGCTTTGCCAACTGGAGATGTTAGTACAGTGAACTCTTGTAGGATTCTTGCTGGCAAAGTTTCATTTTTGTGATTATTCTCAATATTTTTCAGCTCTTGTTAAGCAAGGGGCATATCTAACAGTGTAACCGTGCCTAAAAAGCTAAGTTAAGTAATTTTAGGTGCAGTAAATGTGAAACTAATGTTATCCTCATACTGTGATCTTAATAATAAGTTTTAAGATGTTCATCTACTGTGATGATTCCACTGTCATATGGCATTTTTTCATGTTTCTGATTTCTACATGAAAAAAAAAAAAGTATACGTGAATGTCAAGCAGACACTTTACTGTGGATGAAAAGCTTCTTAAAGAAAAGTTGCCAGATAACTATCATCATATGTTTCTATCCACTGTCAGGTCATATTGACTGAATATTATT

Function

GO:

id name namespace
GO:0009755 hormone-mediated signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_00467911_00469949.mRNA False 654 mRNA 0.50 3 467802 470083
TU27514 True 2376 TUCP 0.38 3 467843 471846

Neighbor

gene id symbol gene type direction distance location
CI01000004_00407881_00409797 NA coding upstream 57663 407881 ~ 410139 (+)
CI01000004_00318181_00339002 CCDC39 coding upstream 127782 317234 ~ 340020 (+)
CI01000004_00311036_00314134 DCUN1D1, DCNL1 coding upstream 153668 309804 ~ 314134 (+)
CI01000004_00291677_00292816 NA coding upstream 174976 291342 ~ 292826 (+)
CI01000004_00266091_00278846 TBL1XR1A, TBL1XR1B, TBL1XR1.L, TBL1XR1 coding upstream 188956 266091 ~ 278846 (+)
CI01000004_00544278_00547753 NA coding downstream 72850 542933 ~ 547983 (+)
CI01000004_00584081_00605137 RC3H1, RC3H1B coding downstream 113998 584081 ~ 605802 (+)
CI01000004_00617015_00621040 EXTL2 coding downstream 146932 617015 ~ 621258 (+)
CI01000004_00630734_00632040 NA coding downstream 160546 630629 ~ 632205 (+)
CI01000004_00664431_00666004 NA coding downstream 194348 664431 ~ 667351 (+)
G24359 NA non-coding upstream 40892 426709 ~ 426910 (+)
G24358 NA non-coding upstream 43315 424271 ~ 424487 (+)
G24292 NA non-coding upstream 89691 377110 ~ 378111 (+)
G24347 NA non-coding upstream 111405 356102 ~ 356397 (+)
G24293 NA non-coding upstream 123121 340135 ~ 344681 (+)
G24426 NA non-coding downstream 38799 508882 ~ 511729 (+)
G24431 NA non-coding downstream 46794 516877 ~ 519291 (+)
G24410 NA non-coding downstream 251432 721515 ~ 722125 (+)
G24413 NA non-coding downstream 252307 722390 ~ 722637 (+)
G24509 NA non-coding downstream 280955 751038 ~ 753326 (+)
CI01000004_01332533_01345585 SCP2 other downstream 862382 1331583 ~ 1346008 (+)
G25187 NA other downstream 1134459 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 1394076 1867166 ~ 1868986 (+)
G25329 NA other downstream 1612974 2083057 ~ 2085707 (+)
G25882 NA other downstream 2077992 2548075 ~ 2573049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016146 NA non-coding NC_007113.7 CM002886.2 7402491 ~ 7431590 (-)