CI01000004_01069526_01076799 (RGS18)


Basic Information

Item Value
gene id CI01000004_01069526_01076799
gene name RGS18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1069526 ~ 1077028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01069526_01076799.mRNA
TTCAACTTCTCGGCCCCCAAGGAGGAAGCATATTTCAAAATGCTCAGTGAGGACGAGCTGCTCGCCTGCAGAATGAAAGACACAAACTTGAGGAATAAAAAAGGTCGACTCAGTCTTCTTCTGACAAAGTCTGGATCACATGAAAATGTCAGTCCTGAGAAGAAGCCACCAGCTAAACCTAAACACATTGCACCGGACTTGGCTATGAGATGGAGTGATTCATTTGAGGAGTTGCTGAGTCACTCAGATGGGGTAGAAGTTTTCACTCGGTTTCTGCGCACTCAGTTCAGCGAGGAGAACATTGAGTTTTGGTTAGCCTGTGAAGACTTCAAAACCACTGAGTCTGCAACCAAACTGCAGTCTAAAGCCAAACAGATACATGCCATTTTCATTGATAAAGAAGCCCCCAAAGAGATAAACATCGACCACTCAACCAAGGCCACTATTGAGAAGAACATCCTCCGTCCGACTAAGTCCTGCTTCGATGTAGCACAAGATAAAATCTACAGCTTGATGAAAAGAGACTGCTACCCACGATTTCTCACCTCCGACATCTACTTGACCCTGACCAAGAGGACAGGCCCACCCGCTATGACCAGAAGAAGGTCCCGCTCCTTCGTTTTTAATGAGCGCCCTGAAGGCACAGCGGCCTGGTAGATTTGTACAGCAATGCAAGTTTTTTGTTGTATATTGAACAAGAGATACCTTTTAGCTATTTATTAACATTAGTTCCTGTGGGCTATATAGTATTTAAATACTAATCATTCTGTTATGATTGTCAAACGTTTGGTTCTGCTTGAACGATTTCATGCCAAGCCTAATTTAATCTACATGTTTAAAATGCCTAAACATTGTAAATATCTGTTTAATGATAATGGTCTGTATA

Function

symbol description
rgs18 Predicted to enable GTPase activator activity. Acts upstream of or within anterior/posterior axis specification; sensory organ development; and thrombocyte differentiation. Is expressed in brain; eye; otic vesicle; and presumptive brain. Orthologous to human RGS18 (regulator of G protein signaling 18).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01069526_01076799.mRNA True 886 mRNA 0.42 5 1069526 1077028

Neighbor

gene id symbol gene type direction distance location
CI01000004_01002230_01003932 NA coding upstream 65544 1002018 ~ 1003982 (+)
CI01000004_00711100_00720189 NA coding upstream 348810 711100 ~ 720716 (+)
CI01000004_00664431_00666004 NA coding upstream 402175 664431 ~ 667351 (+)
CI01000004_00630734_00632040 NA coding upstream 437321 630629 ~ 632205 (+)
CI01000004_00617015_00621040 EXTL2 coding upstream 448268 617015 ~ 621258 (+)
CI01000004_01094661_01097428 NA coding downstream 17633 1094661 ~ 1097658 (+)
CI01000004_01113222_01149263 NA coding downstream 36054 1113082 ~ 1149991 (+)
CI01000004_01167271_01194834 NA coding downstream 88911 1165939 ~ 1195104 (+)
CI01000004_01210703_01220270 PPM1L, PPM1LA, PPM1L.L coding downstream 133426 1210454 ~ 1220283 (+)
CI01000004_01228506_01230204 ARL14 coding downstream 151377 1228405 ~ 1230414 (+)
G24641 NA non-coding upstream 5374 1063697 ~ 1064152 (+)
G24640 NA non-coding upstream 12402 1056544 ~ 1057124 (+)
G24638 NA non-coding upstream 14193 1055095 ~ 1055333 (+)
G24631 NA non-coding upstream 28023 1041298 ~ 1041503 (+)
G24621 NA non-coding upstream 47516 1021621 ~ 1022010 (+)
G24526 NA non-coding downstream 3783 1080811 ~ 1081534 (+)
G25044 NA non-coding downstream 29668 1106696 ~ 1106924 (+)
G25089 NA non-coding downstream 55265 1132293 ~ 1132577 (+)
G25076 NA non-coding downstream 63599 1140627 ~ 1160430 (+)
CI01000004_01237895_01247463 NA non-coding downstream 154707 1235162 ~ 1247463 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 597680 467802 ~ 471846 (+)
CI01000004_01332533_01345585 SCP2 other downstream 255437 1331583 ~ 1346008 (+)
G25187 NA other downstream 527514 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 787131 1867166 ~ 1868986 (+)
G25329 NA other downstream 1006029 2083057 ~ 2085707 (+)
G25882 NA other downstream 1471047 2548075 ~ 2573049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016137 rgs18 coding NC_007113.7 CM002886.2 6535865 ~ 6548838 (-)