CI01000004_01167271_01194834


Basic Information

Item Value
gene id CI01000004_01167271_01194834
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1165939 ~ 1195104 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01167271_01194834.mRNA
GTATAAAAGCGGATAATGGTTTTCTGTGGTTATGTCACATTTCCTTTATAGTGGTTTCACTGTCTTGCCCTGCATCCCAGTGTGCAGACTTTCCGCCCTAAATCGTATTGAATATTACTAATGTCACATACTATTTAAGATGGATAGTATGCACATTGAGAGGCAGGCTTGTTTTTTTTTTTCAGACCTTGATCAGTTTTGCCGGGTCTATGGAAAGGAACGCTCAATGACCAATCAAAACTAGACTAATACCAAAACATGCCACATCCCGTGTTATGCTTTATCAGCTTTCCTTATTTGTCTTCATACTGTATAAAGCAAGTAACTGCATTAAACTACACTACACATACACTATTTTACCTGTAAATCTGCCATGTTGTAATCAAAACTACAGTTAACTTGTCAGTTCCCATAAAAATTACATCCATCCTACAAGTTCTGACTTGGCAGTTGGTCAAAGATTCTTAAAGGGTTAGTTCAACCAAAAATGATAATTGTGTAATCAGTTTAACTTCATGCTGTTCCAAAGATATTTTTAATTAAATCTGAGAGATTTTTGTCCCTCCATTAGCCATGTTTCCATCCAACTATTTTTATATGATTTTTGGGATGTCGCATAAAACATGTTGGATGTAATGCCAAGATGCGCATGAATTCCTAAAATGCACCTATAAAACGTATTCGCTCAGTTGAGGCGGATAATTTTTTTTATCCAATAAGAAACTACGATGGGGAAACATTTACTCAATAAATAAATCCCTTGATGTGTAACAAAAAAAACTCAAATGACTGCCTCAGCAGATGATGTTATTTGATAACTGGACTAACCAGCGGAGCAATTTCATTGCACAGCATTTCAGATGTTGGTTTAGTTATTCTGAAATGCCTGAGCCAAAGTCTGCCATCAAAATGATTTGGTATAATGAACTCCCAGAAATGTCTCACATGATTGCTTTCCCAAACACCAGGTATATACACGCAAGATAACATGACAGTGTTTAGTGCGTTTCGTCTGTGCGCTCTGAGACGCAAGTCATTTATGATGTAGAATAGCCACTGGCTTCCCTAACTGCAGCAACTTCCATTTTTATTACAGATATTTTGGCCCAATTTCCCAGGAAGTGAACACATATTCGCAAATGGTTTATGCAATATTCCTATTTTACACATAAGTTAAATTCGCAACTTTGGATGAAAACATAGTTACTGAAAGTCTTTTGTCCCAAAGCTCTGACGCATGATATGGAAGTATGGAAGTTATGACAATAAAGTTAGTATTTGACTGTGTGTTTATTGTGAATGATGAATGCTTGATGTGTGTAGAGGAAGAGCATGTCGAAGAGGAAGAGCAGTAATTCAGGACTCACTCCTGATAAGAGAAGCCGGTTATCTCAACCCGAACCCGAGGAGGAAGAGGAATTGGGCTTCTTCAGTTCAGGAGATGGCAAAAACTCATCACAGAGTGTCACAGGTGAGGTGGGCATCATAGAGAGTATCTCTCTAAAGAACTTCATGTGTCATTCGTTGCTTGGTCCCTTTGAGTTTGGTCCAAACGTCAACTTTGTCGTAGGAAACAATGGAAGTGGGAAAAGTGCAGTGCTAACTGCTCTGATTGTGGCCCTGGGTGGTAAGGCTCACACCACCAACAGAGGCTCCTCACTCAAAGGATTTGTTAAGGAAGGAGAGAGCTCTGCAGACGTGTCCATCACTCTGAAGAACAGGGGTCGTGATGCGTATAAACCAGAAGTTTTTGGCAAATCCATCATCGTAGATCTTCGTATCTCCAGCGAGGGACTGCGGACTTATAAACTAAGAAGTAAAACAGGTCACCTAGTGTCATCCAAAAAGGAAGAACTGATCTCTATTTTGGATCACTTTAACATCCAGGTGGACAATCCGGTCTCTATCCTTACCCAGGAAATGAGTAAACACTTTCTTCATTCCAAAGGAGAGGGGGACAAATACAAAACTCTACAAGAACTAAAGAGAAAGTACCACGAGAAAGAAGAGCGCTATAAAAACCTGGCTTCACTCGATGAAATGCAGCAGAAGTTGGATTTGCTGAAGAATCAGATGGCCTGGGCTCTGGTGGCAGAGTTGGAGCAGGGAGTGAAGCCCATGAGAGAACGAATCACAGCTGAAGAGAAATCCACCGTCAAATATGACCAGAAGGTGGAAGAGTGGGAGGGGAAAGTTCAGGAGGCCAACAGAATATCCCAACAGTTGCAGGATCAGCTGGAGGGTGTGACAGAGCGGATGCAGCAGCTGCAGCCACGTTGTGCTGAACTAAAGAGCCGAGCACAGGAGCGCAACCGAGATCTCAAAGCAGCCGAGGCTGGACTTCATCGGAAAAAAACGAACTTAAGAGACCTTCAGAAGGATAAAGATCAGCTCAACAAGCGTATCCAAGAACTTAAACAGAGCATAAGTCAGGCGAACTCAGCTGACACACAGGCTCGTGTGGAGAAGATGAATCACATTCAGGCTGAGCTGGAAGATCTGAGTTTCCAGGACTCCACTCTGGCTCAGCAGATCGATCAGTTTAAACAGGCCTGTGCCGCTGCTAAAGAAAGGCTGAGTAGAATGAGCCGTGATAAGCAGAACCTGCTGCATGCGATGGCGTCTAAGCAACGAGATCTGGCTGCTATGGAAAAGAGTCGAAATAACCAAATTTGTCGTTTTGGTGAGCAAATGCCGGGACTGCTGAGGGCTATAGATGAGGCTGACCGGCAGGGTCAGTTCAAGAGGAAACCTGTTGGACCACTTGGATTCTGCATCCGACTGCGGGATTCGGAGCTGGGTCTTGCAGTGGAGAGCTGTCTGAAGTCTCTGATGTTAGCTTTCTGTTGCGATAACCACGCTGATGAGAGAGAGTTACAGAGAATCATGAGTCACTGCTTCCAGCATGGCAGAAGACCTCAGATCATCGTCAGCACATTTACCAACACACTCTACAATGTCAGCAGCAGGGCTGCCAATCACCCTCAATACCCAACAGTGCTCCAGGCCCTTGACATTGAGAATCCAGTTGTGGCCAACTGCCTGATAGACATGAGAGGAATTGAAACCATTCTGCTCATCAAGAACTCTGCAGAAGCGAGAAGGGTCATGCAGGGTGGACACCCACCACGCAATTGCAGGGAGGCCTTCACATGTGAGGGGGACCAGGTCTACAATAACCGTTACTACTCTTGCGACCAGAACCGAGCGCAGTACCTCACTAAAGATGTTGAAGAGGAAATCAGACATTTGCAGTCTGCCTTACATTCCCAGAGAGCACAATTGGATCGCTTTCAGCAGGACGTGCAGCAGATTAATGAGGACTTAAAACAGAACCAAATTCTTCTTTGCAGAGCCTATGAAGACCAAAAGAAGGCCCAGGAACGTTGTCGGAAGCTTCAGGCAGAGCTGACGGAATTGCAGAATGTTGAGGAACCACAGTCAGAGGACTTGAAACCTTTGGAGGAGGAACTGGAGGAGCTCAGCAGCCGGATAAGTGCATGTCAAGTGGAATTTGAAGCTGCGCGGAAGCAGACGCAGACACACAAGAGGGAATGTGAGGAGGCCGAGCAGCTCTACCGGCAGGAGAGGGAAGCTTTTAACAGCATCGCAGAGGAAGCTGAGCCCATTAAGGAGCAGATGAGCAACAGCGATCAGGAGGTGGCGAGGAGTAAACACCACAAAAAACACTATGAAGACAAACGCAAAATTCACGTGGAAATGATTGAGACACTAAAGAGGGACCTGAATGTGAAGGAGCAGGAGTTACAGGCTTCCATTGCAAAAGCCTCAGAAATCTGCCCCGAGCGTTTGGATGTGAGGAGGACTGCGAAGAGTTTGGACAGTGAAATCAGCCGCCTCAGACACAAGATCAACACGCAGCAGGACCAACAAGGACACAGAGACACTATTGTCAGGCAGTACCATGAGGCAAAGGAAAACTTCAATAACGTAGCCCGACAAGTAAAGGGTTTGGAGGCTTTCATCCGCCAGTTGTCCGAGATCATGAACACCAGACACTATGTCTACGCTGAAATGAGAATGTATCTTTCTGTACGCTGTAAGTACTACTTCGATTCCATGCTTTCTCAGAGAGGGTACATAGGGAAGATGACTTTTGACCACAAAAATGAGACTCTGTCCATATCAGTTCAGCCAGGAGAGGGTGGTAAGGCTGCTCTGAGTGACATGCGCTCACTGTCTGGAGGAGAGCGTTCGTTTTCTACCGTGTGCTTCGTCCTGTCGCTGTGGGCCATAGCAGAAGCTCCGTTCCGGGCCTTGGACGAATTTGATGACATGGTGAACAGGAGAATTTCGATGGACATGATGTTGAAGATCGCTGCAAGCCAGCGCTACAGACAATTTATTTTCCTCACACCACAGAGCATGAGTTCTCTTCCGATAAACAACATGATTCGTATCCTACGTCTCAACGACCCTGACCGTAGCCAGTCAACTCTTTCTTTCGGTCAAAGGGACCCAGAATAATGCTGCTGTCCTCTGAACTGTGGTTTACACCTCTGCACTTTATAGTTCTCTATCTTTACTTTATAGTTCTCTATAAATGTTTACATTTTTTATTTTTTTCCAAAGATGTCATTTAAAAGTATGTACATTTATAAACGAATGTAGTTATTTAATACCAAAATTTGCAGGTCTCGTTTTGTTCTGCACTTTAAATTTTTCTAAAAAAAAATAGTTTTTAAGTTTTATAATACGAACGTGATTACAATGTTATTTGCATTGAAACTCGGTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01167271_01194834.mRNA True 4758 mRNA 0.44 25 1165939 1195104

Neighbor

gene id symbol gene type direction distance location
CI01000004_01113222_01149263 NA coding upstream 15948 1113082 ~ 1149991 (+)
CI01000004_01094661_01097428 NA coding upstream 68281 1094661 ~ 1097658 (+)
CI01000004_01069526_01076799 RGS18 coding upstream 88911 1069526 ~ 1077028 (+)
CI01000004_01002230_01003932 NA coding upstream 161957 1002018 ~ 1003982 (+)
CI01000004_00711100_00720189 NA coding upstream 445223 711100 ~ 720716 (+)
CI01000004_01210703_01220270 PPM1L, PPM1LA, PPM1L.L coding downstream 15350 1210454 ~ 1220283 (+)
CI01000004_01228506_01230204 ARL14 coding downstream 33301 1228405 ~ 1230414 (+)
CI01000004_01237895_01247463 NA coding downstream 41264 1235162 ~ 1247463 (+)
CI01000004_01263941_01279547 NA coding downstream 68837 1263941 ~ 1279758 (+)
CI01000004_01302094_01304391 NKEF, TDX, PRDX1 coding downstream 106045 1301149 ~ 1304664 (+)
G25076 NA non-coding upstream 5509 1140627 ~ 1160430 (+)
G25089 NA non-coding upstream 33362 1132293 ~ 1132577 (+)
G25044 NA non-coding upstream 59015 1106696 ~ 1106924 (+)
G24526 NA non-coding upstream 84405 1080811 ~ 1081534 (+)
G24641 NA non-coding upstream 101787 1063697 ~ 1064152 (+)
G25129 NA non-coding downstream 95118 1290222 ~ 1290678 (+)
G25143 NA non-coding downstream 115939 1311043 ~ 1311591 (+)
G25222 NA non-coding downstream 249961 1445065 ~ 1445396 (+)
CI01000004_01446583_01461259 NA non-coding downstream 264229 1446203 ~ 1465922 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 694093 467802 ~ 471846 (+)
CI01000004_01332533_01345585 SCP2 other downstream 137361 1331583 ~ 1346008 (+)
G25187 NA other downstream 409438 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 669055 1867166 ~ 1868986 (+)
G25329 NA other downstream 887953 2083057 ~ 2085707 (+)
G25882 NA other downstream 1352971 2548075 ~ 2573049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016134 si:dkey-119f1.1 coding NC_007113.7 CM002886.2 6321623 ~ 6373829 (-)