CI01000004_01263941_01279547


Basic Information

Item Value
gene id CI01000004_01263941_01279547
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1263941 ~ 1279758 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01263941_01279547.mRNA
GCTCTTCAGCAGCTCTACTATGATCCTGATATGGACAAGAAGAATGTGGCCCAGAAGTGGCTCACACAAGCCCAGGCATCACCACAAGCATGGCACTTCTGCTGGGCTTTGCTCCGGCCAGACAAAGTTCCTGAGATCCAGTTCTTTGGGGCAAGCACATTACATGCTAAAATCTCCCGACATTGGTCCGACCTCCCGACTGGTCAATTAGACTCCCTTCGCTCGCAGCTCATCGCCCAGGTTGGCCAGTTTGCATCCGGGCCCAAGATGGTGCTGACGAGACTGTGTGTTGCTCTGGCCTCTTTGGTCCTTCACATCTTACCTGAAACATGGCCAACCGCAGTACCAGATCTTCTGTGTGCCTTCCAGACAGGGGAGAGTGTGACAGAGGCTGGCGGTCAGGCCCGATGCCTCGCCCTTCTAGAAATCCTCGCCGTTCTGCCCGAGGAGCTTCAGAGCAGCAGGATCGTGGCCTCTCGGCGCTCCCAGCTCAGGAGCGCTCTGGCTGTGGAGTGGAGCTCCATCTGCTCTCTGCTCCAGCAGTTACTGCAGCGGGCTGATGCACCCTGTGGGGTCAGAGAACGGGTGCTGAGGTGTGTGTCCTCCTGGCTCACGCTGGACATCGCTTTAAAAGACAGCGAGGGGCTGCTGCAGAGCTGCTTTGCCCTTCTTAAGGAGTCTGAGCTCTTTGACATGGCTGTAGAAACCATCGTCAGCATCATCTCACAGCCTGATTGTCAGAGGTTTGCAGACAGTCTGCTGAAGGTTGTTCCTCAGGTTCTGGGTCTTCAGGAGCAGCTAAAGAAGGCGGTGCAGGATGGAGACATGGAGACGTCTCATGGAATCTGTCGCATTGCTGTAGCTCTGGGAGAAACGCATTGCAGGACTCTTCTGGAGCAGGTGGATCACTGGCAGGGCTTTCAGGCTCTAGTGAGCATGATTATGTCCTGCACTGGTTCACCCGGACATTACCCTGTGGATGAGACCGCCAGCTCTCTCACACTTACATTCTGGTACACCCTACAGGATGAGATTACGTCATTGGATTCTGAGAGGCAGACACTCTATCTACAAATCTACAGACCTGTGTACTTCCAGCTGGTGGATGTTCTGCTGCAGAAGGCCTGTTTTCCCAGAGATGAGGACTACGCCACATGGTCCGCAGATGACAAAGAGCAGTTCAGGACCTACAGGGTTGACATCTCTGATACTCTGATGTATGTGTATGAGCTGTTGGGCCCAGAGCTCCTCAGAAACCTGTATGATAAACTAGGCACACTGCTGACGGACACTACACGCCTCTCCTCATGGCAAGATATAGAGGCTCTGCTGTTTGGTTTTCAATCCATTGCTGAGACAGTAGATGTCAGTTACTCAGATGTCATTCCAGGACTGATCGGTCTGATTCCTCTGATCACAGCAAACAATATCCAGCTGGCTGAGACCATCATGTTCACCATAGGCTCTTTGGCTGAGTGGTTGGCCGATCATTCGCTCATGTTGGCGAGTGTCCTGCCTGTGGTCTTGCATGGTCTGTCCAACCTGGATCTGTCCGTGTCTTGTGTCTCAGCTCTGAAGAGAATCTGCCGAGAGTGTCGGCATCACCTCCACCTGCACGCCAGTGACATCATGGCCGTCTCACAGGCGGTGCTTGTCAAAGAGATCCATAAAAGCCCGCAGTGCATGTGGATAATGCAGGCGCTGGGTTTCCTGCTCTCAGCCCTGCCAAGTGAAGAGATTCTGGGGAAGCTGCTCTCTCTGGTCACCCCCCACATCCAACAGCTGGAGAAACTGGCCAATGAGCTGGTGGTGGTTGTCCTGCAGCAGGCCTTCCCTTTAATCCAGACTGTTCTCAACAAGTGGCTGACTGAACCTGAGGTGGTAGAGGCAGTGTGTGCTGTCTTTGAGAAATCACTGAAGACCCTTATCCATGACTTTACACCGCTGGTGTCTCAGCTTTGTGAGCTCATTGGTCAGATGTTTGGAGCTTACCCACAAGCCTCGGCTTTAGACCTCACACGACAATTAGTTCACATTTTTGGCTGTGAGAAGGATCATCTTTCTCCAATCACTGCCCTTTTAGAGCTGATTACCAACATCACCATGTCCATTTTTCAGCTAGGCTCCAGAGATCATCCAGATGTGGTGGAGTCATTTATGCAGCTTCATGCTCAGACGGAGATGATCTCTCATTGTGAGGATGTTCCTGCAGTAAGGGAGGTGCTACAGGATGACGGCAAACTTCTTCTTCAGACCCTACTAGAGGCTATTGGGGGTCAGAGTCCAAGCATTCTGGCTGAGCACTACGCGGAGGTCTTGTTCTCAGTGAGTCGTAACTGTCCCAGTGTTCTGTCTCTGTGGCTCAGAGAGGCTCTTCTGCCCCCTGGCTTCCCGAGCTCACATCTCACCGCTGAGCACAAAGAACACTTCTGCCAGCAGATCCTCAGGGAACAAGCGAGTAAGCGACGGATGAAGGACATTGTGAAAGAGTTTGCCCTGTTGAGTCGGGGACTAGAAGGGAGTGAGTACACAGCGAGTTACTAAATACTCTCCATGCAAGACCCAGAATGGATCTCAAGTCATCATTGCTTTAGTATTGTGGGGTCACTCTTTTGAATATAATCAAACCACACTGTCAAAAAGTTATGATTGAAAAAGCAATCTGAATGATTGAAATAATTGGATGTGATTTTGTTTTTTGTAATACTGTCAGATCATCTGTAAACATCACAACAGCACTGACTTCACTGCAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01263941_01279547.mRNA True 2755 mRNA 0.51 17 1263941 1279758

Neighbor

gene id symbol gene type direction distance location
CI01000004_01237895_01247463 NA coding upstream 16478 1235162 ~ 1247463 (+)
CI01000004_01228506_01230204 ARL14 coding upstream 33527 1228405 ~ 1230414 (+)
CI01000004_01210703_01220270 PPM1L, PPM1LA, PPM1L.L coding upstream 43658 1210454 ~ 1220283 (+)
CI01000004_01167271_01194834 NA coding upstream 68837 1165939 ~ 1195104 (+)
CI01000004_01113222_01149263 NA coding upstream 113950 1113082 ~ 1149991 (+)
CI01000004_01302094_01304391 NKEF, TDX, PRDX1 coding downstream 21391 1301149 ~ 1304664 (+)
CI01000004_01305065_01310559 ZTE38 coding downstream 25307 1305065 ~ 1310559 (+)
CI01000004_01321057_01329157 UCK2A, UCK2B, UCK2 coding downstream 41299 1321057 ~ 1329157 (+)
CI01000004_01332533_01345585 SCP2 coding downstream 51825 1331583 ~ 1346008 (+)
CI01000004_01377802_01389208 NA coding downstream 97927 1377685 ~ 1389415 (+)
G25076 NA non-coding upstream 103511 1140627 ~ 1160430 (+)
G25089 NA non-coding upstream 131364 1132293 ~ 1132577 (+)
G25044 NA non-coding upstream 157017 1106696 ~ 1106924 (+)
G24526 NA non-coding upstream 182407 1080811 ~ 1081534 (+)
G25129 NA non-coding downstream 10464 1290222 ~ 1290678 (+)
G25143 NA non-coding downstream 31285 1311043 ~ 1311591 (+)
G25222 NA non-coding downstream 165307 1445065 ~ 1445396 (+)
CI01000004_01446583_01461259 NA non-coding downstream 179575 1446203 ~ 1465922 (+)
G25226 NA non-coding downstream 290861 1570619 ~ 1570878 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 792095 467802 ~ 471846 (+)
G25187 NA other downstream 324784 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 584401 1867166 ~ 1868986 (+)
G25329 NA other downstream 803299 2083057 ~ 2085707 (+)
G25882 NA other downstream 1268317 2548075 ~ 2573049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016130 IPO13 coding NC_007113.7 CM002886.2 6150855 ~ 6182098 (-)