CI01000004_01305065_01310559 (ZTE38)


Basic Information

Item Value
gene id CI01000004_01305065_01310559
gene name ZTE38
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1305065 ~ 1310559 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01305065_01310559.mRNA
CTTTTGAGGAGATCATTTGAGTGTGAGGAAGCTAACATTAAAGTTAGCTCAAGCATGACAACCAGACAGAAGAAACTAACTCAAGACAAACAGGTGATTGCTGAGGCGCTGGATACTGAGGCTCAGTCACTGGTGTTTGTCAAGCGCATGGTGGTTATAGCTGTCTCCTCCATCACCTATCTGCGTGGGATATTTCCTGAGGACTCCTACAGATCCAGATACCTGGAAGATTTGTGTATCAAAGTCCTCAAACAGGATTGCTCTTGCCCTGGAGCCCGCAAACTCATCAAATGGCTGATGGGATGTTTTGATGCTTTGGAGAAGAGATATGTACACACAAGCCCAGATGACAGTAATCATGTCATTGAGTCCTATCAGTTTAAGTTCAGATACTCAGAGTGTGGACCACAGATGGACATCCTGAGTAATGTGAATGGGGACCTGAGAGTGACCGTAGAGGACACTAAGAAAGCTTCAACGCTCCTGATCAGAAAACTGTTCCTCCTCATGCAGAATCTAGAAGCTCTGCCCACTGCCGTTTACCTCACTATGAAACTCTACTACTATGATGATGTCACTCCACCTGAATACGAGCCACCAGGATTCAAGGCAGGTGTAAATGAAAGTCTGTGGTTCGAGGGAAGTGCAGTGCACTTCAGAGTGGGCGAACTGCAGTCTCGCTTCCACACCATGAAGTTGCGTGTGACGGCAGCACAGAGCCGTCTTGGGAAGCTGCAGGAGGGGGGCCAGTTGAGTGAGAACGACACGGAGATGGAGACACCCTCTCTCTCTCAAATCAGAGCAGCAGAAACGGTGACCAGAAACTGTGACCAGGACCTGCCATCTGAAGATGAATCTCTTGCACAGTTTAAACAGCCCAAAAAAGCTATAGCAAAG

Function

symbol description
zte38 Orthologous to human HORMAD2 (HORMA domain containing 2).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01305065_01310559.mRNA True 897 mRNA 0.48 10 1305065 1310559

Neighbor

gene id symbol gene type direction distance location
CI01000004_01302094_01304391 NKEF, TDX, PRDX1 coding upstream 401 1301149 ~ 1304664 (+)
CI01000004_01263941_01279547 NA coding upstream 25307 1263941 ~ 1279758 (+)
CI01000004_01237895_01247463 NA coding upstream 57602 1235162 ~ 1247463 (+)
CI01000004_01228506_01230204 ARL14 coding upstream 74651 1228405 ~ 1230414 (+)
CI01000004_01210703_01220270 PPM1L, PPM1LA, PPM1L.L coding upstream 84782 1210454 ~ 1220283 (+)
CI01000004_01321057_01329157 UCK2A, UCK2B, UCK2 coding downstream 10498 1321057 ~ 1329157 (+)
CI01000004_01332533_01345585 SCP2 coding downstream 21024 1331583 ~ 1346008 (+)
CI01000004_01377802_01389208 NA coding downstream 67126 1377685 ~ 1389415 (+)
CI01000004_01426795_01429440 EBNA1BP2 coding downstream 116236 1426795 ~ 1429440 (+)
CI01000004_01446583_01461259 NA coding downstream 135644 1446203 ~ 1465922 (+)
G25129 NA non-coding upstream 14387 1290222 ~ 1290678 (+)
G25076 NA non-coding upstream 144635 1140627 ~ 1160430 (+)
G25089 NA non-coding upstream 172488 1132293 ~ 1132577 (+)
G25044 NA non-coding upstream 198141 1106696 ~ 1106924 (+)
G25143 NA non-coding downstream 484 1311043 ~ 1311591 (+)
G25222 NA non-coding downstream 134506 1445065 ~ 1445396 (+)
G25226 NA non-coding downstream 260060 1570619 ~ 1570878 (+)
G25192 NA non-coding downstream 274707 1585266 ~ 1585620 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 833219 467802 ~ 471846 (+)
G25187 NA other downstream 293983 1604542 ~ 1616470 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 553600 1867166 ~ 1868986 (+)
G25329 NA other downstream 772498 2083057 ~ 2085707 (+)
G25882 NA other downstream 1237516 2548075 ~ 2573049 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016128 zte38 coding NC_007113.7 CM002886.2 6092058 ~ 6104035 (-)