CI01000004_01750322_01754593 (TCTEX1D1)


Basic Information

Item Value
gene id CI01000004_01750322_01754593
gene name TCTEX1D1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1750322 ~ 1755323 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01750322_01754593.mRNA
AATTGATACAATTCAGTCGATTTTCCGCAAAATGTCTGATTTAGCGAAAGAGAAAGCAGCACGTTTGCTGAAGAAACGTGGAAGTGTGTCTTCTCTGAGCAGTCATGAAGTCAGAGCTAAAGACACTTTTGGCAAAACTAAGGACTCTATCAGCACTGTGTCCTACATGGAAGAGCCTGGACATCATGATGATATTCCACGACCTACAGTGCAAATGGAAAACACCTATCGGCTCATGATAACAGTGAAAGACATTCTGAAGGATGTGTTGACCAGCTATCTGCAGGAGGAGAAATATGAACCCGAGTTGTGCAGGCAGATGACCAAAACAATCTCTGAGGTTGTCAAGGCCAGAGTTAAAGATTTGATGATTCCTCGCTATAAGTTCATAGTCATCATCAGCATTGGTCAGATCAGAGACCAGAACATACGCATGGGGAGTAGATGCCTGTGGGACGAGACACACGACAATTTCTCCTCGCATACTTTCAAAAACAGCTCACTCTTTGCTGCCGCTACTGTCTATGGTGTATATTTTGAATGAGTCTGCAAGAATAGTCCTTAGTCAGGGCATTGCCATATTTCATTTTTAACAAGATTTAAACCAAGGCTGTGAGGGAAAGAATAGAGTGCATTCAATGGATTGTACTGTTTAACAACACGCCGCTTGTTCAGCTGACGATACGTCTTTCCAAAAAAGTTTCAGTAGACAAAAACTCCATTAAATAGTTTTGAAAGTTGTGAGTTGTGAAAATGATGTGATCTAGGACCTTTATAATGCGTCTTTGTTAAATTCAATATAGCGTCCTGACTAAAGTCTATGTCAGCTCGATGTTAGTGACTAGTGAATTTAGCGAGCCTGTGAGCACCACATGCAGTAGTGGCCAAAAATGCTGTCCGGACTAGGAAAATTGACATCTTTACCCTTTATTCAAATATTATAAAAAAATTGTTAAAGATATATAAAATATATTCTCCTCATATTTTGATGGCTTAATCAAACTTGAAAAGACTTTAAAAACAAATATCCCCTCCGGACATAACTTTTGGCCACTACTGTGTACGCTCTCCGATCATTCTGAAGTTATTGCCTGTGATGCTATTTAATTCTTATTTTTATATTATAGAAGCACATGTTGGACATAACTTAATGCCTGTTGTCTTAACAAGAGAACGTTTTACCTCATATAAACAATTGAAAATATAAATCTCTTTCCATGCATTGAGTTGAAATGTCATCAGTTAATACCTCATTGTATTTTATACCTCAGTCA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01750322_01754593.mRNA True 1274 mRNA 0.38 4 1750322 1755323

Neighbor

gene id symbol gene type direction distance location
CI01000004_01715623_01744133 SGIP1B, SGIP1 coding upstream 6189 1715623 ~ 1744133 (+)
CI01000004_01670419_01699238 PDE4BB, PDE4B coding upstream 51084 1670419 ~ 1699238 (+)
CI01000004_01623427_01625278 LEPROT coding upstream 124982 1623427 ~ 1625340 (+)
CI01000004_01592461_01602968 NA coding upstream 147354 1592356 ~ 1602968 (+)
CI01000004_01578642_01584658 NA coding upstream 165514 1578566 ~ 1584808 (+)
CI01000004_01757017_01757201 NA coding downstream 1694 1756990 ~ 1757864 (+)
CI01000004_01800502_01807872 NA coding downstream 45179 1800502 ~ 1808852 (+)
CI01000004_01823571_01825813 FAM78BA, FAM78BB, FAM78B coding downstream 68248 1823571 ~ 1826766 (+)
CI01000004_01855598_01856473 IMP3.L, IMP3 coding downstream 100028 1855351 ~ 1856524 (+)
CI01000004_01867166_01868986 C7H1ORF21 coding downstream 111843 1867166 ~ 1868986 (+)
G25242 NA non-coding upstream 45764 1704257 ~ 1704558 (+)
G25192 NA non-coding upstream 164702 1585266 ~ 1585620 (+)
G25226 NA non-coding upstream 179444 1570619 ~ 1570878 (+)
CI01000004_01446583_01461259 NA non-coding upstream 260445 1446203 ~ 1465922 (+)
G25222 NA non-coding upstream 304926 1445065 ~ 1445396 (+)
G25248 NA non-coding downstream 5207 1760530 ~ 1762263 (+)
G25253 NA non-coding downstream 14502 1769825 ~ 1770177 (+)
G25254 NA non-coding downstream 15072 1770395 ~ 1770704 (+)
G25337 NA non-coding downstream 190603 1945926 ~ 1950133 (+)
G25187 NA other upstream 133852 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 402148 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1278476 467802 ~ 471846 (+)
G25329 NA other downstream 327734 2083057 ~ 2085707 (+)
G25882 NA other downstream 792752 2548075 ~ 2573049 (+)
G25992 NA other downstream 981213 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 1003133 2745885 ~ 2769135 (+)

Expression


Co-expression Network