CI01000004_01814534_01821755 (CMPK1, CMPK)


Basic Information

Item Value
gene id CI01000004_01814534_01821755
gene name CMPK1, CMPK
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1813782 ~ 1821755 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01814534_01821755.mRNA
GCTGTCGGAGAAGCTCCCACGCGTTGTGCACAGGATTAGTGTGATGATGAAGCCGCAGGTTGTGTTTGTTTTGGGCGGGCCTGGCGCGGGGAAAGGGACACAATGCGCGAGAATCGTGGAGAACTACAGCTACACTCACCTGTCTGCTGGAGACCTCCTGAGAGAGGAGCGCAGCCGCAAGGGCTCGGAGTTTGGTCAGCTCATTGACAACTACATCAAAGAGGGCAAGATAGTTCCTGTAGAAATCACCATCAACTTACTGAAAAAGGCAATGGAAGAAACTATGAAAGTTGATGAAAAGAAGTTTCGCTTTCTTATTGATGGTTTTCCACGTAACCAAGACAACCTACAGGGGTGGAACACTGTCATGGACGGGAAGGCAGATGTCAAGTTTGTTCTTTTCTTTGACTGCGGTAATGAGGTGTGCATTGACAGATGTTTAGAGCGGGGAAAGAGCAGCGGACGCACTGATGACAACAGAGAAAGTCTAGAGAAGAGGATCCAGACGTACCTCCAGTCCACACGGCCCATTATAGAGCAGTACGAGAAGCAAGGGAAAGTGCGCACGATTGATGCCTCCCGGTCGGTGGATGAGGTGTTTGCAGATGTGAAGAACATTCTGGATAAAGAAGGCTAAACATGTCCAGTGCAAAAATCCAAATTCTTGAAAATTAAGGTGTCTGTTTATTGATGTCAGCAGTGCTATGCTTTCTTCATGTATCTATATAAATTTTTACTCATTCTCCAGTAAAATAGGGTTTTTTAGATATGAGAGGGTGTGTGCTTATATCTGTGTTTGTAAGTCTGAAAGGAAAACACTTAGTTGTTGGGCAAACAATACATATTTACTCAATATTACACTAAAGATGAACAATATTTCAGTAGAGAATCAAGCAAGCTCGAACAATAACGTTCAGGGCACTTCTATAGGAACACAATACGCATTTGCTCTTAACTTGAAGATCATCTTCCTTATGCTTAGAAACATCTACCCTTCAGTGTATAACACACAATATAGAAATAAGCCAAGAGTAGGTTGTAAATTGCTTCTGCACTTAACTATTTCATTCTACAAGCAAATGAGCGATTATTAGTGACCAATAGGAAGTAAGTATTTTAGTAGATTTCAAGACCTGTTTGTGTTATATTTGGTGACATTTTTATCATTGTTTTGTATAGTAATCCACAGCAGGTTCTGAGAACATATTGCTGGCTACTTAAGAATAGAGAACTCCGTTTTAGCTGTACATTTTTCTTTTATCATATTGTGGCTGCTGTATTCCAAACACATGCCATCTTTGCTCAGGCAGTAGATTTTAAGATGTGGGGAACGTGTGCTCATGTTTTTATTTGATTGTCTCAGCGCCTTTGGGGTCGTTCATGAATAAA

Function

symbol description
cmpk Predicted to enable UMP kinase activity; cytidylate kinase activity; and nucleoside diphosphate kinase activity. Predicted to be involved in nucleoside phosphate metabolic process. Predicted to act upstream of or within 'de novo' pyrimidine nucleobase biosynthetic process; phosphorylation; and pyrimidine nucleotide biosynthetic process. Predicted to be active in cytoplasm and nucleus. Is expressed in neural plate and notochord. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Orthologous to human CMPK1 (cytidine/uridine monophosphate kinase 1).
cmpk1 Enables nucleoside diphosphate kinase activity and nucleoside monophosphate kinase activity. Involved in nucleoside diphosphate phosphorylation and nucleoside triphosphate biosynthetic process. Located in nucleolus and nucleoplasm. Implicated in lung non-small cell carcinoma.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K13800 CMPK1, UMPK; UMP-CMP kinase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01814534_01821755.mRNA True 1389 mRNA 0.41 6 1813782 1821755

Neighbor

gene id symbol gene type direction distance location
CI01000004_01773383_01774888 INSL5B coding downstream 38840 1772928 ~ 1774942 (-)
CI01000004_01758554_01762415 NA coding downstream 51367 1758422 ~ 1762415 (-)
CI01000004_01626984_01627238 NA coding downstream 186544 1626216 ~ 1627238 (-)
CI01000004_01605140_01622364 NA coding downstream 191418 1604552 ~ 1622364 (-)
CI01000004_01554696_01564701 NA coding downstream 249081 1554656 ~ 1564701 (-)
CI01000004_01833090_01839923 SLC35A3B, SLC35A3 coding upstream 11259 1833014 ~ 1839923 (-)
CI01000004_01853673_01854481 NA coding upstream 31433 1853188 ~ 1855232 (-)
CI01000004_01859136_01861721 SEC22BB, SEC22B, SEC22BA, SEC22B.L, S22BB coding upstream 37376 1859131 ~ 1863688 (-)
CI01000004_01864053_01864374 NA coding upstream 42137 1863892 ~ 1864374 (-)
CI01000004_01874467_01874928 TSEN15 coding upstream 52456 1874211 ~ 1875203 (-)
G25661 NA non-coding downstream 56461 1755538 ~ 1757321 (-)
G25712 NA non-coding downstream 60322 1753239 ~ 1753460 (-)
G25700 NA non-coding downstream 83159 1728532 ~ 1730623 (-)
G25690 NA non-coding downstream 121721 1691294 ~ 1692061 (-)
G25672 NA non-coding downstream 122945 1689359 ~ 1690837 (-)
G25666 NA non-coding upstream 83558 1905313 ~ 1907541 (-)
G25744 NA non-coding upstream 88535 1910290 ~ 1910523 (-)
G25642 NA non-coding upstream 115444 1937199 ~ 1944111 (-)
G25640 NA non-coding upstream 194502 2016257 ~ 2018609 (-)
G25676 NA non-coding upstream 251978 2073733 ~ 2074026 (-)
G26788 NA other upstream 1452678 3267683 ~ 3275721 (-)
G27746 NA other upstream 3356472 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3798628 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4713072 6538904 ~ 6541252 (-)
G29388 NA other upstream 4809538 6631293 ~ 6631907 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G138948 LOC106675582 non-coding NC_053124.1 CM020921.1 35403441 ~ 35549974 (-)
mexican tetra (Astyanax mexicanus) G138383 cmpk1,cmpk,LOC107719256,LOC107681787,LOC107671754,LOC107709354,LOC107559368 non-coding NC_035912.1 CM008315.1 2522526 ~ 2529626 (-)