CI01000004_01823571_01825813 (FAM78BA, FAM78BB, FAM78B)


Basic Information

Item Value
gene id CI01000004_01823571_01825813
gene name FAM78BA, FAM78BB, FAM78B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1823571 ~ 1826766 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01823571_01825813.mRNA
ATGGGTTGCATTCAGAGCATCGCCTGCAAGCCCCGCATCCGACGGGAGAACATAGTGGTCTATGAGGTCTCAGCCTCCATTGACCAATGCCCGACCATCATTGAGGAGAATTCGCCCATTGTCCTGCGATACAAGACCCCATACTTCAGAGCATCGGCTGGGATTGTGATGCCCCCGGTTCCCAGAAACGAAACATGGACTGTGGGCTGGATTCAGGCGTGCACCCAAATGGAGTTCTTCAATACATATGGTGATATTGGCATGTCCAGCTGGGAATTACCCGAGCTTCGGGAAGGACGGGTAAAGGCCATAAGCGATTCTGACGGCGTCAGTTATCCCTGGTATGGTAACACTACCGAAACAGTGACCCTCTCAGGTCCCACATCCAAGCCATCCAGGCTAACGGTGAGCATGAATGACAACTTCTACCCCAGTGTGACTTGGGCAGTGCCCATCAGCAACAGCAACACACCCATGCTCACACACATCACCCGAGACCAGAGCTTCATCACCTGGCTGGTGGCGCTAAACGCAGACACCAAAGAGCGTATTGTTCTTCAGACAGTACGCTGGCGTATGCGTGTAGACATTGAGGTGGATCCTTCCATGCCGCTTGGTTCTCGTGCCAAACTGATGGGACGACCGCATCAGGAACAGCCACACATTCTCAGTAACAATGAGCCTATCCCGCCCAATGCGCTGGGCAGGCCCAATGCCAACGATGCCCAGGTGCTGATGTGGAGGCCCAGGAGGGGACAACCTCTGGTGGTCATACCACCCAAATAGAGTTGTCTTAACAGTGCCTAAAGGACATTGAAGACTTCATGCACTGTTTGGACACTGGATTTTAGGAAATCGCAAGCTGCTCTGTGGATTGCCAGCTTTGTAGGGTTTCTCAGTTCCTCTGAACTAGACTGTCGAGAAGGGAATTCTCTGTGTGCACTATGAAGTTTGACTACCTTTCAGCTTCAAAGTACATGGTCAGTTTTCAAATGACTGGGAGTAACTAGTACTAAATGAGCAGCCACTTGGAACAAATCCCTTAAGTTTACAGAATAGTTCACCCAAAAATTTACTAACCCTCATGTCGTTACAAACTCTTTCTTCCGTGGAAGACAAAAGAAGATGTTTTGAAAAATGTTTCAGCTGTTTTTGTCCATACAATGAAAGTTAATGGGTTCCAAAATGTAAATCTCAAAATAGGACACAAATGTACCATAAAATTAATCAAGACAACTCAACTAATATATTTTAAGTCCTCTGGGTCAAAATGATCACTTTGAATGATAATATAAGCCTTATTCACTCTAAAAGTGAATTGTTGATCAACACATGCATACATAGACTACATCAAAAATAGCAACACAAACCTCAAATGTGACCCTGGACCACAAAACCTGTCATAAGGGTCAATTCTTTTGAAATTGAAATTTATACATCATCTGAAATCAAAATATTGAGAAAATTGCCTTTAAAGTTGTCCAAATGAAGTCCTTAGAAATGCATATTACTTACAAAAATAATTTTTTGATATATTTACAGTAGGAAATTTACAAAATATCTTCATGGAACATGATCTTTACTTAATATCCTAATGATTTTTTGAACCATACAATGTATTGTTGGCTATTGCTACAAATATACCAATGCGACTTATGTGGTCCAGGGTCACTAATGTGAACAAATGTCAACAAAGGTCAAACCTCAAAACTTCAGGTTCTTGCACATCATGTGACCAA

Function

symbol description
fam78ba Is expressed in heart. Orthologous to human FAM78B (family with sequence similarity 78 member B).
fam78bb Orthologous to human FAM78B (family with sequence similarity 78 member B).
fam78b Orthologous to human FAM78B (family with sequence similarity 78 member B).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01823571_01825813.mRNA True 1739 mRNA 0.43 2 1823571 1826766

Neighbor

gene id symbol gene type direction distance location
CI01000004_01800502_01807872 NA coding upstream 14719 1800502 ~ 1808852 (+)
CI01000004_01757017_01757201 NA coding upstream 65707 1756990 ~ 1757864 (+)
CI01000004_01750322_01754593 TCTEX1D1 coding upstream 68248 1750322 ~ 1755323 (+)
CI01000004_01715623_01744133 SGIP1B, SGIP1 coding upstream 79438 1715623 ~ 1744133 (+)
CI01000004_01670419_01699238 PDE4BB, PDE4B coding upstream 124333 1670419 ~ 1699238 (+)
CI01000004_01855598_01856473 IMP3.L, IMP3 coding downstream 28585 1855351 ~ 1856524 (+)
CI01000004_01867166_01868986 C7H1ORF21 coding downstream 40400 1867166 ~ 1868986 (+)
CI01000004_01883020_01908403 ABI1B, ABI1 coding downstream 56254 1883020 ~ 1908634 (+)
CI01000004_01917089_01920203 NA coding downstream 88860 1915626 ~ 1920705 (+)
CI01000004_01937296_01943730 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding downstream 110530 1937296 ~ 1943730 (+)
G25254 NA non-coding upstream 52867 1770395 ~ 1770704 (+)
G25253 NA non-coding upstream 53394 1769825 ~ 1770177 (+)
G25248 NA non-coding upstream 61308 1760530 ~ 1762263 (+)
G25242 NA non-coding upstream 119013 1704257 ~ 1704558 (+)
G25337 NA non-coding downstream 119160 1945926 ~ 1950133 (+)
G25344 NA non-coding downstream 128619 1955385 ~ 1955605 (+)
G25345 NA non-coding downstream 129376 1956142 ~ 1956492 (+)
G25324 NA non-coding downstream 129876 1956642 ~ 1957261 (+)
CI01000004_01961480_01979407 DVL3A non-coding downstream 131887 1960055 ~ 1979465 (+)
G25187 NA other upstream 207101 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 475397 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1351725 467802 ~ 471846 (+)
G25329 NA other downstream 256291 2083057 ~ 2085707 (+)
G25882 NA other downstream 721309 2548075 ~ 2573049 (+)
G25992 NA other downstream 909770 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 931690 2745885 ~ 2769135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016186 fam78ba coding NC_007113.7 CM002886.2 10056100 ~ 10062575 (-)