CI01000004_01855598_01856473 (IMP3.L, IMP3)


Basic Information

Item Value
gene id CI01000004_01855598_01856473
gene name IMP3.L, IMP3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1855351 ~ 1856524 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01855598_01856473.mRNA
CTATATAAAACAAAATATATTCATTATATTGTGCATATTATTATGCACTACACTTTCATTTTATTACTGTGAAAATTAGTTTTCATATATATATATATATGTTGTTGTCTTTCTCCTCCTGACCACTGGGCGCCAGTGTCGAGTTTAGCAGCCGCATATTTTTTTATAGAAAACTACAGTGAGTGAAAAGCACGCGTGTGAAAGCTAATGATAACTAGAGAAAAATAACACGGTTTTATTTCTCAAAATGGTTCGTAAATTGAAATATCACGAGCAGAAACTCTTGAAGAAAGTTGATTTTATTAACTGGGAGGTTGACAATAATTTACACGAGGTTAAAATATTGAGGAGATACCGCATTGAGAAGAGGGAAGATTACACCAAATACAACAAACTTAGTCGAAATATCAGAGAGTTGGCACAGAAAATACGGGACTTGGACGAAAAAGATGGCTTCAGAGCTCAAAGTACAACCATTTTTTTGGAAAAGCTTTACAGTGTCGGTTTGATTCCCACCAAACAGAGTCTCTCCCTTGCAAATGAAGTCAGTGCATCTGCATTCTGCAGGAGACGGCTTCCCACAATCATGACGAAACTGCGTATGGCTCCGAGCCTTAAGGTTGCCACAACCTTCATCGAGCAGGGCCGTATCCTTCAGTGAGAATATGTGTACTTCATATTCTTAAGTGTTGTAACATTTTAGTGTATAGAA

Function

symbol description
imp3 Predicted to enable snoRNA binding activity. Predicted to be involved in rRNA processing. Part of Mpp10 complex. Orthologous to human IMP3 (IMP U3 small nucleolar ribonucleoprotein 3).

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14560 IMP3; U3 small nucleolar ribonucleoprotein protein IMP3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01855598_01856473.mRNA True 712 mRNA 0.37 4 1855351 1856524

Neighbor

gene id symbol gene type direction distance location
CI01000004_01823571_01825813 FAM78BA, FAM78BB, FAM78B coding upstream 28585 1823571 ~ 1826766 (+)
CI01000004_01800502_01807872 NA coding upstream 46499 1800502 ~ 1808852 (+)
CI01000004_01757017_01757201 NA coding upstream 97487 1756990 ~ 1757864 (+)
CI01000004_01750322_01754593 TCTEX1D1 coding upstream 100028 1750322 ~ 1755323 (+)
CI01000004_01715623_01744133 SGIP1B, SGIP1 coding upstream 111218 1715623 ~ 1744133 (+)
CI01000004_01867166_01868986 C7H1ORF21 coding downstream 10642 1867166 ~ 1868986 (+)
CI01000004_01883020_01908403 ABI1B, ABI1 coding downstream 26496 1883020 ~ 1908634 (+)
CI01000004_01917089_01920203 NA coding downstream 59102 1915626 ~ 1920705 (+)
CI01000004_01937296_01943730 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding downstream 80772 1937296 ~ 1943730 (+)
CI01000004_01961480_01979407 DVL3A coding downstream 103531 1960055 ~ 1979465 (+)
G25254 NA non-coding upstream 84647 1770395 ~ 1770704 (+)
G25253 NA non-coding upstream 85174 1769825 ~ 1770177 (+)
G25248 NA non-coding upstream 93088 1760530 ~ 1762263 (+)
G25242 NA non-coding upstream 150793 1704257 ~ 1704558 (+)
G25337 NA non-coding downstream 89402 1945926 ~ 1950133 (+)
G25344 NA non-coding downstream 98861 1955385 ~ 1955605 (+)
G25345 NA non-coding downstream 99618 1956142 ~ 1956492 (+)
G25324 NA non-coding downstream 100118 1956642 ~ 1957261 (+)
G25187 NA other upstream 238881 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 507177 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1383505 467802 ~ 471846 (+)
G25329 NA other downstream 226533 2083057 ~ 2085707 (+)
G25882 NA other downstream 691551 2548075 ~ 2573049 (+)
G25992 NA other downstream 880012 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 901932 2745885 ~ 2769135 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016185 imp3 coding NC_007113.7 CM002886.2 9983079 ~ 9989947 (-)