CI01000004_01883020_01908403 (ABI1B, ABI1)


Basic Information

Item Value
gene id CI01000004_01883020_01908403
gene name ABI1B, ABI1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1883020 ~ 1908634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_01883020_01908403.mRNA
ACTGTTCAGAACGCTGTTCCGTTTCGCACCGCTGAGAAAAACGTACTCCTCTCCCATTGGTCCAGAACCAATTCTCAGAGCGAGTCACCCAATCACAGAACAGTGCGTAAAGCGCTGCGTTGAGAATTGTCGTCCTGCTGAAAAAGAGGAGCCAACGGGAATCCCACAATGCCAGGCGAGGGACCTCCTGTCGGAGAGTGAAGCTCCGCTGGTTTCAATGAAAGAGGGGGAGAAGAGTAATGCAGAGGGATGTAAGATGGCAGAGCTACAAATGTTGTTAGAGGAAGAAATTCCGGCTGGAAAAAGAGCCCTTGTGGAGAGCTACCAGAACCTTTCAAGGGTTGCGGAATATTGCGAGAACAATTATGTGCAGGCACAAGACAAGAGGAAAGCCCTGGAGGAGACCAAAGCCTACACCACCCAGTCCCTGGCGAGCGTGGCCTATCAGATCAATGCCTTAGCCAACAATGTGCTGCAGCTGTTGGATATCCAGGCTTCACAGCTGCGCAGGATGGAGTCCTCCATCAACCATATCTCTCAGGTCAGCGCTGGGCACTACAACACCAACAAAAACAACCAGACTGTGGACATTCATAAAGAGAAAGTTGCCAGACGAGAGATTGGGATCCTCACCACTAACAAAAACACCTCTCGCACCCACAAGATCATCGCCCCCGGGAACATGGAGCGACCCGTGCGCTACATCAGGAAGCCCATAGATTACACCCTGTTGGATGATGTGGGTCACGGTGTAAAACAAGGGAATAACCAGCCAGCTCGGGCAGGTGGAGGAACATTATCCAGGACCAACCCACCCACACAGAAGCCCCCAAGCCCCCCCATGGCAGGGAGAGGTACCCTGGGACGAAACACACCGTACAAGACCCTCGAGCCAGTCAAGCCTCCTGTGGTGCCTAATGACTACATGACCAGTCCAGCACGTCTGGGCAGCCAGAACAGCCCGGGACGCACAGCCTCACTCAATCAGAGACCCAGAACGCACAGTGGCAGTAGTGGGGGCAGCGGTGGTCGGGAGAACAGCAGTAATAGTATGGGAATCCCTCTGGCTGTGCCAACACCCTCCCCTCCCAGTATGGCACCAGTAGTCCCTCCAGGTCCAGGTTTGGGCCCAATCCCAATGTCTCAGTTCGGAACAATCTCCCGGCAGATCTCCAGACACAATTCCTCCACTACTTCTTCTTCCGCCTCTATGGTGTCAGCTACCGGCACCTACCGGCGCGCCCCTGCTAGCTCCTCCCAGTTCTCTGTGCCTCAACCCCACCTGAACGGAGGTCCCACGTACCCCCAGAACACAATGTCTGTCGCTCCACCACCTCCTCCCATGGTGCAGCTGACGCCCCAGATTCCCCTCACTGGCTTTGTAGCCAGAGTTCAGGAGAACATAACAGACAGCCCATCTCCTCCCCCACCTCCTCTACCTGAGGACACGCCCATGTTTGAGGAAGCAGCTCCGCCCCCTCCACCTCCACCTGTGGATTATGATGAAGAAGATGCAGCTCTGGTGCACTACAATGACCCCTATGCTGATGGAGACCCCCACTGGGCCCCAAAATCCTATATAGAAAAGGTGGTGGCCATCTATGACTACACAAAGGACAAAGATGATGAGCTGTCCTTCATGGAGGGCGCCATCATCTACATCATCAAGAAAAATGATGATGGCTGGTTCGAAGGCGTGTGTAATGGTGTGACCGGACTGTTTCCTGGCAACTACGTTGAATCCATCATGCATTACGCTGACTAATACTAAATCCCAGAGACAGCATCCAATGCAGCCAATCAGTTACAAACATTGCAAAGTGCATTAGAATATGACTGAATGTTTGTTTTTGTCCAATCACCAATGTATGAAGGGATCTACAATGCTCACTGTTTGAGGAGACAGGGCTCGTATTGCCTCTACAAAGAATATGAAAAGAAACAAACAAGTCTCACTACTTTCTGGTTAGGTTGCCTCATATATTTTGTACATATA

Function

symbol description
abi1b Predicted to enable SH3 domain binding activity. Predicted to be located in cell junction; cytoskeleton; and filopodium. Predicted to be active in lamellipodium. Orthologous to human ABI1 (abl interactor 1).
abi1 Enables SH3 domain binding activity and signaling adaptor activity. Acts upstream of or within peptidyl-tyrosine phosphorylation. Located in filopodium tip and lamellipodium. Part of SCAR complex.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_01883020_01908403.mRNA True 1996 mRNA 0.52 10 1883020 1908634

Neighbor

gene id symbol gene type direction distance location
CI01000004_01867166_01868986 C7H1ORF21 coding upstream 14034 1867166 ~ 1868986 (+)
CI01000004_01855598_01856473 IMP3.L, IMP3 coding upstream 26496 1855351 ~ 1856524 (+)
CI01000004_01823571_01825813 FAM78BA, FAM78BB, FAM78B coding upstream 56254 1823571 ~ 1826766 (+)
CI01000004_01800502_01807872 NA coding upstream 74168 1800502 ~ 1808852 (+)
CI01000004_01757017_01757201 NA coding upstream 125156 1756990 ~ 1757864 (+)
CI01000004_01917089_01920203 NA coding downstream 6992 1915626 ~ 1920705 (+)
CI01000004_01937296_01943730 AP2M1, AP2M1.L, AP2M1A, AP2M1B coding downstream 28662 1937296 ~ 1943730 (+)
CI01000004_01961480_01979407 DVL3A coding downstream 51421 1960055 ~ 1979465 (+)
CI01000004_01999847_02001406 NA coding downstream 91213 1999847 ~ 2002779 (+)
CI01000004_02004004_02012588 NA coding downstream 94237 2002871 ~ 2013414 (+)
G25254 NA non-coding upstream 112316 1770395 ~ 1770704 (+)
G25253 NA non-coding upstream 112843 1769825 ~ 1770177 (+)
G25248 NA non-coding upstream 120757 1760530 ~ 1762263 (+)
G25242 NA non-coding upstream 178462 1704257 ~ 1704558 (+)
G25337 NA non-coding downstream 37292 1945926 ~ 1950133 (+)
G25344 NA non-coding downstream 46751 1955385 ~ 1955605 (+)
G25345 NA non-coding downstream 47508 1956142 ~ 1956492 (+)
G25324 NA non-coding downstream 48008 1956642 ~ 1957261 (+)
G25187 NA other upstream 266550 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 534846 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1411174 467802 ~ 471846 (+)
G25329 NA other downstream 174423 2083057 ~ 2085707 (+)
G25882 NA other downstream 639441 2548075 ~ 2573049 (+)
G25992 NA other downstream 827902 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 849822 2745885 ~ 2769135 (+)
G26245 NA other downstream 1600383 3509017 ~ 3522393 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location