Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000004_02116310_02120268 |
| gene name | VPS4B |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000004 |
| NCBI id | null |
| chromosome length | 17451736 |
| location | 2115937 ~ 2120360 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| vps4b | Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B). |
| id | name | namespace |
|---|---|---|
| GO:0007033 | vacuole organization | biological_process |
| id | description |
|---|---|
| K12196 | VPS4; vacuolar protein-sorting-associated protein 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000004_02116310_02120268.mRNA | True | 1197 | mRNA | 0.41 | 6 | 2115937 | 2120360 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000004_02068075_02072887 | NA | coding | upstream | 41876 | 2067958 ~ 2074081 (+) |
| CI01000004_02033826_02057420 | TSC22D2 | coding | upstream | 58284 | 2033003 ~ 2057653 (+) |
| CI01000004_02014703_02018248 | NA | coding | upstream | 97471 | 2014600 ~ 2018466 (+) |
| CI01000004_02004004_02012588 | NA | coding | upstream | 102523 | 2002871 ~ 2013414 (+) |
| CI01000004_01999847_02001406 | NA | coding | upstream | 113158 | 1999847 ~ 2002779 (+) |
| CI01000004_02126757_02136937 | KDSR | coding | downstream | 6106 | 2126466 ~ 2137348 (+) |
| CI01000004_02143355_02186281 | BCL2B | coding | downstream | 22316 | 2142676 ~ 2186771 (+) |
| CI01000004_02528689_02568243 | NA | coding | downstream | 408329 | 2528689 ~ 2569227 (+) |
| CI01000004_02671199_02727898 | GPR158B | coding | downstream | 550839 | 2671199 ~ 2728328 (+) |
| CI01000004_02745885_02768971 | NA | coding | downstream | 625525 | 2745885 ~ 2769135 (+) |
| G25332 | NA | non-coding | upstream | 34495 | 2074919 ~ 2081442 (+) |
| G25297 | NA | non-coding | upstream | 88145 | 1978730 ~ 2027792 (+) |
| CI01000004_01961480_01979407 | DVL3A | non-coding | upstream | 154878 | 1960055 ~ 1979465 (+) |
| G25324 | NA | non-coding | upstream | 158676 | 1956642 ~ 1957261 (+) |
| G25325 | NA | non-coding | downstream | 18558 | 2138918 ~ 2139139 (+) |
| G25301 | NA | non-coding | downstream | 19018 | 2139378 ~ 2140889 (+) |
| G25372 | NA | non-coding | downstream | 71829 | 2192189 ~ 2192405 (+) |
| G25308 | NA | non-coding | downstream | 74047 | 2194407 ~ 2195224 (+) |
| G25310 | NA | non-coding | downstream | 117666 | 2238026 ~ 2240157 (+) |
| G25329 | NA | other | upstream | 30230 | 2083057 ~ 2085707 (+) |
| CI01000004_01867166_01868986 | C7H1ORF21 | other | upstream | 242579 | 1867166 ~ 1868986 (+) |
| G25187 | NA | other | upstream | 499467 | 1604542 ~ 1616470 (+) |
| CI01000004_01332533_01345585 | SCP2 | other | upstream | 767763 | 1331583 ~ 1346008 (+) |
| CI01000004_00467911_00469949 | AGRP2 | other | upstream | 1644091 | 467802 ~ 471846 (+) |
| G25882 | NA | other | downstream | 427715 | 2548075 ~ 2573049 (+) |
| G25992 | NA | other | downstream | 616176 | 2736536 ~ 2736768 (+) |
| G26245 | NA | other | downstream | 1388657 | 3509017 ~ 3522393 (+) |
| CI01000004_03550525_03552621 | PTGER4C | other | downstream | 1430688 | 3550329 ~ 3553423 (+) |
