CI01000004_02126757_02136937 (KDSR)


Basic Information

Item Value
gene id CI01000004_02126757_02136937
gene name KDSR
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 2126466 ~ 2137348 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_02126757_02136937.mRNA
GTTTAAAAAACTACAACTCCCATAATTCCATCGTCCAAGCGCAGTATCCCGTTCAAAGTGCATAGATTCTGTGTTTTGGTTCATGTAGTGAAAGGAAAGAGTTAGCTTTTGAGGTTTTACGACTTTAATTTAGTATTTTATCTACCGCACAAGCCTCTAGCACATTACCAGATAATATAAGCCGATAAACAGCTCGTCTGAAGGCCTGTTATCTTCTGTCCGCGAGACAGGGGAGTGCCTGGAATTGGACATTTAGCTTGTGAGCTAACGTCAGCAGCATCAGGTTGACCCATGTCCTCTGAGGTGGCTTTCGGCTCCGCGCTCTCACACTGGCTCACCTTTAACTCCTGGTGGCTGCTTCTGCCTTTCATTATGCTCCTGGTAGTGGCTGCTTTCATCGTGGCCTTCGTGCTGCTGCTGTACATGATATCCCCGTTAATAAGCCCCAAACCTCTCAAACTGAACGGGGCCCATGTGGTGGTGACCGGAGGCAGCAGTGGGATTGGGAAGTGTATCGCCATGGAATGCTACAAACATGGTGCCTTCATCACTCTGGTGGCACGAGATGAGCACAAGCTGGTTCAAGCCAAGAAAGAAGTGGAAAAGTGTGCCATAAATGATAAGCAGGTGGTGCTTTGCATTTCTGTTGATGTGTCGAAAGACTACAGCCAAGTGGAGAGTGTCATAAAACAAGCTCAAGAGAAGCTGGGTCCTGTGGACATGCTGGTGAATTGTGCAGGGACGTCTATATCTGGGAAGTTTGAGGAAGTGGAAGTTGACCGCTTCAAGGGAGGGCAGATTGGCCTCTTTGGCTACACGGCCTATTCGCCATCCAAATTCGCCCTGCGTGGTCTGGCTGAGGCCTTGCAGATGGAGATGAAGCCCTATAATATCTATGTTACAGTGGCGTATCCCCCAGACACGGACACACCAGGTTTTGCAGAAGAGAATAAGAATAAGCCTCTGGAGACCAAGTTAATTTCAGAGACGTCTGGAGTCTGTCAGCCTGAGCAAGTGGCAAAAATTGCAGTGAAGGATGCTGTGCAGGGAAATTTCACCAGCTCATTTGGTCCTGATGGCTACATGCTGTCAGCACTGACCTGTGGGATGTCACCTGTTACCTCCATCACTGAGGGGCTGCAACAGATTGTGACCATGGGACTGTTCCGCACCATCGCTCTCTTCTACCTGGGCAGTTTTGACAGCATCGTCCGCCGCTGCATGATCCAGAGAGAACAGTCCAAAGCAGCTGACAAGAGGGAGTAGCACCAGCATTCCCACCACTATCCACCTCCATCACCACCACTACATTCACCCATACACCTTCACAGCACGCACAAACCCAGCCTGGAAGACGTTTAAGTGGGTAGAAGAGGTCTACGCTGACAAAATAGGTGTCTGTAATAGGTGTCCATCTTTAATGATGCATCATTCAGGGCCCAATCATTCCAGTGCATGCTACATCAATATTTCAGTCTCTTAAAAAAACAAAACAAAAACAAGTTTATTTGCATTTAAGTTACTTACTCTTTGGCTCTCACTGCCTCTACTACATTCTCATGTTTCAGAAGGTTTGTGGTCATTCTCAAACAGGCCCGTGTTCTTGCATACACGAACGCCACATCTGAGTTCTTGTTCTAGCTAGCCTGTTGACATAATATTATTTCAACAGTAGAA

Function

symbol description
kdsr Predicted to enable 3-dehydrosphinganine reductase activity. Acts upstream of or within several processes, including cellular sphingolipid homeostasis; platelet formation; and sphingomyelin biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Used to study liver disease and thrombocytopenia. Human ortholog(s) of this gene implicated in erythrokeratodermia variabilis et progressiva 4 and follicular lymphoma. Orthologous to human KDSR (3-ketodihydrosphingosine reductase).

GO:

id name namespace
GO:0047560 3-dehydrosphinganine reductase activity molecular_function

KEGG:

id description
K04708 KDSR; 3-dehydrosphinganine reductase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_02126757_02136937.mRNA True 1677 mRNA 0.48 10 2126466 2137348

Neighbor

gene id symbol gene type direction distance location
CI01000004_02116310_02120268 VPS4B coding upstream 6106 2115937 ~ 2120360 (+)
CI01000004_02068075_02072887 NA coding upstream 52405 2067958 ~ 2074081 (+)
CI01000004_02033826_02057420 TSC22D2 coding upstream 68813 2033003 ~ 2057653 (+)
CI01000004_02014703_02018248 NA coding upstream 108000 2014600 ~ 2018466 (+)
CI01000004_02004004_02012588 NA coding upstream 113052 2002871 ~ 2013414 (+)
CI01000004_02143355_02186281 BCL2B coding downstream 5328 2142676 ~ 2186771 (+)
CI01000004_02528689_02568243 NA coding downstream 391341 2528689 ~ 2569227 (+)
CI01000004_02671199_02727898 GPR158B coding downstream 533851 2671199 ~ 2728328 (+)
CI01000004_02745885_02768971 NA coding downstream 608537 2745885 ~ 2769135 (+)
CI01000004_02865415_02867952 NA coding downstream 727505 2864853 ~ 2868369 (+)
G25358 NA non-coding upstream 3875 2085759 ~ 2122591 (+)
G25332 NA non-coding upstream 45024 2074919 ~ 2081442 (+)
G25297 NA non-coding upstream 98674 1978730 ~ 2027792 (+)
CI01000004_01961480_01979407 DVL3A non-coding upstream 165407 1960055 ~ 1979465 (+)
G25325 NA non-coding downstream 1570 2138918 ~ 2139139 (+)
G25301 NA non-coding downstream 2030 2139378 ~ 2140889 (+)
G25372 NA non-coding downstream 54841 2192189 ~ 2192405 (+)
G25308 NA non-coding downstream 57059 2194407 ~ 2195224 (+)
G25310 NA non-coding downstream 100678 2238026 ~ 2240157 (+)
G25329 NA other upstream 40759 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 253108 1867166 ~ 1868986 (+)
G25187 NA other upstream 509996 1604542 ~ 1616470 (+)
CI01000004_01332533_01345585 SCP2 other upstream 778292 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1654620 467802 ~ 471846 (+)
G25882 NA other downstream 410727 2548075 ~ 2573049 (+)
G25992 NA other downstream 599188 2736536 ~ 2736768 (+)
G26245 NA other downstream 1371669 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 1413700 3550329 ~ 3553423 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location