CI01000004_03206527_03212826 (CDC7)


Basic Information

Item Value
gene id CI01000004_03206527_03212826
gene name CDC7
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3206527 ~ 3212954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03206527_03212826.mRNA
TCTGGTGGTACAGTGTTTCTCAAACACTAAAATACTTGGTGAAAGCAAAAACAACAGGAGATGTTGAGACGGACATTGCATACCTTTATGAAGTTCTGCCACAGCTGTCTCAGATTTTTCGTATCATAGATAAAATTGGAGAAGGCACTTTCAGCTCAGTGTATTTGGCAGAGGCGCAGATGACCGACGGTTCAAGAAGGATGTTTGCATTGAAACACCTGATCCCCACCAGTCACCCTGTGCGAATAGCTGCTGAACTCCAGTGCTTGACTGTTGCTGGAGGGACAGAAAATGTGATGGGAGTCACGTACTGCTTCAGGAAAGAGCATCACGTGGTTATTGTCATGCCATACATGGAGCATCAAACCTTTGTTGATATTGTTGGATCCTTGAGTTTTGAGGATGTGAAGCATTACATCTTCCACCTGCTCAAAGCCTTGAGACACATTCACAAATTTGGCATCATCCACCGAGACATCAAACCAACCAATTTCCTGTTCAATCAACAAAGGAGAGAGTACTCTCTAGTGGATTTTGGCCTGGCACAGGGCACTCATGACACACAGATAGAACTGCTGAAGGTGGTGAAATCAAAAGCTTATAAAGGTGGAGGGTCATCTAAGATGGTGGAGGAATCACTTGGGAAACAGAAACTAGTGCCTTTACCACCCAACACCAGAAATCCTGCTGTCCAGTTCAGCACTAAAGCACCAGCTAAAAGACCCTGCCCACCCTCACGTATTAAACACAGCAAGGAACTGTTGGGACTTGATAAGGCACCACGGTCTGTATTTGGGGAGAAAAACCTAAACGGCGCAAACTCTCATAAACCTGGCACTGACAAAGTTGAGGGATTGCTTTTAAAACCAAAAAGAGAGGAGATAATTCCACGCAAAATTGTTTCTTCAAAACACCGCTCAGTCCCTGTGAGAACTCCATTAAATCAGAGACAGAAAACCCCTGCTGAGAGTCAGAAACCCAAACCCCCTGTCGTCAGCTCGATGCTTACCTGCAACTGCTACATGACTGACCGCGTCTGCAACATCTGCCTGTCCAGGAAACAGCAGGTGGCTCCGAGGGCTGGTACCCCAGGCTTTAGGGCTCCAGAGGTTCTGACTAAGTGCCCCAACCAGGGAACAGCTATTGACATGTGGTCAGCAGGAGTCATATTGCTGTCACTGCTGAGCGGGAGGTATCCGTTCTTCAAAGCCAGTGACGATCTGATCGCTCTTACTCAGATCATGACCATTCGAGGATCTAAGGAGACGATCGAGGCTGCTAAGACGTTTGGTATGTCATTGTCATCAGGCTCAAGGGGACAGATGTCTTATTTCTTGCACATTCACCTGACTGAATATTTTTTCTTGTGTCTGAATCCAGGTAAATCTATAGTGTGCAGTCGTGAACTTCCTCGGCTGGACCTGAGGATCCTCTGTGAGACTCTGAGAGGTTTGCGATCATGGGATGACTCCTCACTTCCTGCTGAGTTTCAAGCCTCACATAACCCAGCAGAAGTAAAACAGGATGCTGGGAGTCCTGCTAGGAAACACATGAGCTCAGGCTCACTCAAAAGCAGTGCAGAGCTGCAGGAGATGGGCTGGGTTAAAGTGCCAGATTATGTATACGACCTCTTGGATAAACTGTTAGATTTAAACCCAGCAACGAGGATAACAGCCTCCATGGCACTGCAGCATCCACTCTTCAAAGATATGACAGATTAATTTTTGCGCATCCTAATTTTGTATTCTGTAAAGGGTTACATGAATGCATTTATTTTGTAACTACAATCTGTACAGTGATTTATTTATTTGTCCTTTTTTGGGGGGGGGTTATAGATTCACATTTGAGA

Function

symbol description
cdc7 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in double-strand break repair via break-induced replication and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDC7 (cell division cycle 7).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K02214 CDC7; cell division control protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03206527_03212826.mRNA True 1849 mRNA 0.46 10 3206527 3212954

Neighbor

gene id symbol gene type direction distance location
CI01000004_03197795_03203130 CDCP2 coding upstream 3397 3197795 ~ 3203130 (+)
CI01000004_03177552_03184142 NA coding upstream 21470 3177552 ~ 3185057 (+)
CI01000004_03126603_03131458 FAM151A coding upstream 74966 3126494 ~ 3131561 (+)
CI01000004_03124603_03125975 NA coding upstream 80420 3124603 ~ 3126107 (+)
CI01000004_03119968_03122260 NA coding upstream 84267 3119968 ~ 3122260 (+)
CI01000004_03223283_03238063 RPAP2 coding downstream 9959 3222913 ~ 3238081 (+)
CI01000004_03267663_03271388 NA coding downstream 53765 3266719 ~ 3271562 (+)
CI01000004_03275086_03275655 RPL5 coding downstream 62132 3275086 ~ 3275702 (+)
CI01000004_03311105_03322167 MTF2 coding downstream 98151 3311105 ~ 3322802 (+)
CI01000004_03324524_03348961 CCDC18 coding downstream 111570 3324524 ~ 3349113 (+)
G26147 NA non-coding upstream 109373 3096857 ~ 3097154 (+)
G26128 NA non-coding upstream 136289 3070002 ~ 3070238 (+)
G26063 NA non-coding upstream 136741 3069460 ~ 3069786 (+)
G26059 NA non-coding upstream 208553 2995491 ~ 2997974 (+)
G26099 NA non-coding upstream 254209 2951897 ~ 2952318 (+)
G26171 NA non-coding downstream 4868 3217822 ~ 3218778 (+)
G26182 NA non-coding downstream 53523 3266477 ~ 3266688 (+)
G26184 NA non-coding downstream 66939 3279893 ~ 3280094 (+)
G26185 NA non-coding downstream 69950 3282904 ~ 3283164 (+)
CI01000004_02745885_02768971 NA other upstream 447589 2745885 ~ 2769135 (+)
G25992 NA other upstream 469759 2736536 ~ 2736768 (+)
G25882 NA other upstream 633478 2548075 ~ 2573049 (+)
G25329 NA other upstream 1120820 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 1333169 1867166 ~ 1868986 (+)
G26245 NA other downstream 296063 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 338094 3550329 ~ 3553423 (+)
G27805 NA other downstream 2159871 5372825 ~ 5373803 (+)
G28165 NA other downstream 2519635 5732589 ~ 5733001 (+)
G28302 NA other downstream 3257074 6470028 ~ 6502087 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016197 cdc7 coding NC_007113.7 CM002886.2 10863942 ~ 10877765 (-)