CI01000004_03223283_03238063 (RPAP2)


Basic Information

Item Value
gene id CI01000004_03223283_03238063
gene name RPAP2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3222913 ~ 3238081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03223283_03238063.mRNA
CTATATAAAAAAAGAAACTATTAATAAATAGACCTCACTCTTCGTCAAAGATTCTGTACAGATATAAACTGGTTCTTATACGTTAGTCATTAGCAAGATAGCTAAAATCTCTATACGACTGGCGCTTTCTAAATAAGCTCTATAATAAGATTATGCGTTCGCGCAGCTTTGTATGGCATGGCTGCTGTTTTATTTTGCTAATAAGATATAAGTCTACTTAACAAGATACAAACTGCAAAAGCGCGCTCACTCACAGCTATACTTTCAATAAGCAGAGCCGCATGTTTGGAAACTGCAGCGGAATGAATCGTGTCGCTGGCGGCTTGCCGTAGTGCGGTGACGTAGGCGGAAAAAGCTTGAGAAAACAAGCATGGAAGCCGGTGAAGTAACGAGAAAGATTAGCTCTTCGAAATCAAAAAAGAAAGGTGGAAAGGGTACCCAGGCGATTTCAGCAGCGGTTGAGGCGAGAAGGAGGGAGGCCATTAAAGACGCGCTCAGACAGAAGCTTGAGTTGGAGCGCAAAGCCCTGCAGGTGGTTGAGCGGCTGCTGGAGGACAGTGTGACAGAGGAATTCCTCATCGACTGTGCATGGCACATCACTTCTACCAATTACAAAGACACAGTGGAAGAACGGTCCATTGCCAAACTATGTGGATATCCTGTGTGTCCTAATAAACTAATCAACGTGCCCACTCAGCGGTTTAAAATATCCACTAAAACTAATAGGGTCTATGATATTACAGAGCGCAAGTGCTTTTGCAGTAATTTCTGCTACAAAGCCTCCAAATGTTTTGAGTTCCAGATATCAAAAACTCCACTTTGGCTCAGAAATGAGGAGAGAGGCAGCTCAGGACAGGAGATAAAGTTGGCAGACAAGCCTATAAAAGAAGCCGACATTGAGAATCCTGTCCCAGACATTCCTGAGTCTTACAAGGACTCCCCTCCCTTCAGCCAGAGTGACAACAGCGACATTGAGCAAGACTTTGTCTCCAGTGTGGTGTACGGACCGCATAAACATGCACGGGTTCACTGGGGAAAACTGCCAAAGAGGGATGGAGTGAGTGAGGATGGGTCGAGTGCTGAAATTAAGCAATATGCACATCCTGAACCTACGCAAGGAGAAAATAATGATGAAAGTGGATCTTCGCAAACTCCTCAACCACAGAAGGACCTGACCGACTGTCTACCTGAACTGGATAAAACCACATCTGCGGAATCTGTTATTGAAGGAATTCTGGAGCCTTTGAATCAGTGTAGTCTGACGGACACTGCAACCCAACAGGAAACTAACTCACTTTCACAGCCTGAGATTGGCAACTCTCTCACTACCGCCGGTGGTCTGAACATCACCCAGGTGGGCATGAGCAAGAGAGGAGCTGCAGGCCTCAAAGGATTGTTGAAGGATCATAACAAAGCTAAAACATCTCCTACAGCTGTCAATCTGTGCCTGCTAGAGCGTCTACAACAAACCTTTATGGAGTGGAGAACTGAAGAAACTATGAAGTTTCTTTATGGGCCTGAATATGCTTCAGGAACAGAGTCTACAGCACAGGAAGTAGAGGAACTGGATGAAGATGACCTAGATGAGGCTGAAATGGAGATGGACTTAAGATGGGACAGTGGAAGTACCTTCACTCCCAGAGCTCCGGCTCCTGATATTGAGACACTGCGAAAAGAAACTGAGTCGCTGGAGCTGAGAGTGAGGGAGTTTTATAAAGGAGTGTGTGTTCTGCCTGAAGAGCTTGAGACTGCCATCAAAGAGACTGAAGATACACAGGACAGTGTGAAGGACCCTCCTCTGCCTTTGGTTGATTCTCATGCGCAGCACCTGATTCAGAAACGCATTGCTGTGGAGAAGCTTAGCCGGAGCTTGAGAGATGTTGTGGGACCCCTGTGCCTAACATTGAGTGATGTCATCAATGACATAAATAATCTGGTCAGGACATTCAGGTTTACAAACACAAATATCATTCACAAAATCCCAGAATGGACTTTAATCGCTGTGGTTCTTCTGTCAGTGTTAACAGAAGTGTCACCATTGCTGAGAGAGTCACTGGCAAGTCCGTCTTCGTTGGAGTACATCTCCTCTCTCATGAGAGAGCTGAAACTGGAGGACAAAGATCTACACAACCTTGTGCTGCTCTTCAAACCCTGTGTTACTCCACAAACATAATACAGCACAATCATTATA

Function

symbol description
rpap2 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Predicted to be involved in dephosphorylation of RNA polymerase II C-terminal domain and snRNA transcription. Predicted to be located in cytoplasm and nucleus. Predicted to be part of RNA polymerase II, holoenzyme. Orthologous to human RPAP2 (RNA polymerase II associated protein 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03223283_03238063.mRNA True 2191 mRNA 0.45 11 3222913 3238081

Neighbor

gene id symbol gene type direction distance location
CI01000004_03206527_03212826 CDC7 coding upstream 9959 3206527 ~ 3212954 (+)
CI01000004_03197795_03203130 CDCP2 coding upstream 19783 3197795 ~ 3203130 (+)
CI01000004_03177552_03184142 NA coding upstream 37856 3177552 ~ 3185057 (+)
CI01000004_03126603_03131458 FAM151A coding upstream 91352 3126494 ~ 3131561 (+)
CI01000004_03124603_03125975 NA coding upstream 96806 3124603 ~ 3126107 (+)
CI01000004_03267663_03271388 NA coding downstream 28638 3266719 ~ 3271562 (+)
CI01000004_03275086_03275655 RPL5 coding downstream 37005 3275086 ~ 3275702 (+)
CI01000004_03311105_03322167 MTF2 coding downstream 73024 3311105 ~ 3322802 (+)
CI01000004_03324524_03348961 CCDC18 coding downstream 86443 3324524 ~ 3349113 (+)
CI01000004_03361436_03375825 SCINLB coding downstream 122837 3360918 ~ 3376605 (+)
G26171 NA non-coding upstream 4135 3217822 ~ 3218778 (+)
G26147 NA non-coding upstream 125759 3096857 ~ 3097154 (+)
G26128 NA non-coding upstream 152675 3070002 ~ 3070238 (+)
G26063 NA non-coding upstream 153127 3069460 ~ 3069786 (+)
G26059 NA non-coding upstream 224939 2995491 ~ 2997974 (+)
G26182 NA non-coding downstream 28396 3266477 ~ 3266688 (+)
G26184 NA non-coding downstream 41812 3279893 ~ 3280094 (+)
G26185 NA non-coding downstream 44823 3282904 ~ 3283164 (+)
G26186 NA non-coding downstream 47745 3285826 ~ 3286162 (+)
CI01000004_02745885_02768971 NA other upstream 463975 2745885 ~ 2769135 (+)
G25992 NA other upstream 486145 2736536 ~ 2736768 (+)
G25882 NA other upstream 649864 2548075 ~ 2573049 (+)
G25329 NA other upstream 1137206 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 1349555 1867166 ~ 1868986 (+)
G26245 NA other downstream 270936 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 312967 3550329 ~ 3553423 (+)
G27805 NA other downstream 2134744 5372825 ~ 5373803 (+)
G28165 NA other downstream 2494508 5732589 ~ 5733001 (+)
G28302 NA other downstream 3231947 6470028 ~ 6502087 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016196 rpap2 coding NC_007113.7 CM002886.2 10790875 ~ 10821053 (-)