CI01000004_03267663_03271388


Basic Information

Item Value
gene id CI01000004_03267663_03271388
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 3266719 ~ 3271562 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_03267663_03271388.mRNA
CTTTAAAAGAATGTACGAATTCTTTTTACGAATGTCTAGTGTACGAATGTACTGAGCATTTATGGCAAACTAAAATATACTTTAATGTAATTTCTAATGAAACGTATACATTTGCAATTTAGTACATTTACAATATATTAACTTTAAATGTAATATCAAATAGCACACTACTATTAAAATTATAATAAAGTATTTTACATGTGCTTTACTATGTTAGTAAACGTAAGTGTACTTCTTTAAAGCACAACAACTGATTATTAAAACATAATGATATAAAATGTACTTTAAATGAAAACTTTAAATTTGACATTTATTACCAAAGGGACTTGTACTGTGAAAGTGTATGTACAGTAAGTGTGCTAAGAAACAGTCACAAAAGTGGACACATAGGCAGCGTTTTCTTTTTATTAATATTATCTGATCAACAAGTAGGCCTACAGTTGTAGTACACTACAATTGCACATTCAACACAATTAAGAACACTTTTGCCACAAAGGAAGTCCCCTTATTCAAATTGGGAATATTTTTTGACTGCCCATTAGAACATGATTCATTTTTTAAATTTATAAGAATCTTATTTGATTCTTAGAGGATTCTCATTTGATCCCATTAGGAACGCTTTGTTAATTTGTTCAAATGGTTGAATCCTATACAATTCCTTTAGGATTTACCCTAGTAAAAGAAATGAAAACAAATGAATTGCTTTCCAACCAGCACAGAATTTTGAGTGCTTAGATCACTTTTTTTTTTAATTATTTTTTTTTTTAATTTAATTTTATTTATTTATTTATTTATTTTGTATTTTTTATTTTATTTTTTATTTTATTTTATTTTGAAATGTTGAAGTTTCATGCACATGGCTGTCCTGCCGTGTTTCCTCCAGGACGCTAGGGACTCACACACTTTGGTCTCCGCGTGTTTTGTTTATCCGGTCGCAGCGCAGCATGAACTTCCTTTTCTCAGTGCAGCGGGAGCAGTATCGGAGTCTGAAGACTTCAGTCTCCCAACCTAAAGGAGAACAAACGATTACAAAATGCTGTTTGTTGCAGGGCTTCGTTAAGGTGGTTAAGAACAAGGCGTATTTCAAGAGATACCAGGTCAAGTTCAGGAGGAGGAGAGAGGGAAAAACTGACTACTTTGCCCGCAAACGCCTTGTCATCCAAGACAAGAACAAGTACAACACACCGAAGTACAGGATGATCGTTCGACTCTCCAACAGGGATATTGTTTGCCAGATCGCATATGCCAAAATTGAAGGCGACGCGATCGTCTGCGCTGCTTACTCTCACGAGTTGCCAAAGTATGGCGTTACCGTTGGACTGACAAACTACGCTGCCGCCTACTGCACCGGTTTGCTGTGTGCACGCAGGCTGCTGAATAAGTTTGGTCTGGATAAGGTCTACGAAGGCCAGGTTGAGGTAACTGGTGACGAATTTAATGTGGAAAGCATTGATGGCCAGCCAGGGGCATTTACATGCTACCTGGACGCTGGTCTCGCCAGAACCAGCACGGGGAATAAGGTGTTTGGAGCTCTCAAAGGAGCAGTGGATGGAGGACTGTCCATCCCTCACAGGTCAGTGAATGCAGGTTTTGTTTTTTACAAACTTAGACTAAGGGTGCTCCGATTTATCGGCTACTGATCACTATTGGATCGGTGATCTCTAAATTTGCCAATCTCATAAACTGTTCTCATGCTGACGACGCATAAAGACATGCGCTCCTGCCTTTAGAGTTATGTCATGACGTGCAGCGGCACCATCTCAATCTCTGTCCTGCGTGGGTAAAACAATTATAACTCTGAAGGTGATGTACAA
>TU29558
CATGATTCATTTTTTAAATTTATAAGAATCTTATTTGATTCTTAGAGGATTCTCATTTGATCCCATTAGGAACGCTTTGTTAATTTGTTCAAATGGTTGAATCCTATACAATTCCTTTAGGATTTACCCTAGTAAAAGAAATGAAAACAAATGAATTGCTTTCCAACCAGCACAGAATTTTGAGTGCTTAGATCACTTTTTTTTTTAATTATTTTTTTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_03267663_03271388.mRNA False 1814 mRNA 0.38 5 3266719 3271562
TU29558 True 221 lncRNA 0.44 1 3267263 3267483

Neighbor

gene id symbol gene type direction distance location
CI01000004_03223283_03238063 RPAP2 coding upstream 28638 3222913 ~ 3238081 (+)
CI01000004_03206527_03212826 CDC7 coding upstream 53765 3206527 ~ 3212954 (+)
CI01000004_03197795_03203130 CDCP2 coding upstream 63589 3197795 ~ 3203130 (+)
CI01000004_03177552_03184142 NA coding upstream 81662 3177552 ~ 3185057 (+)
CI01000004_03126603_03131458 FAM151A coding upstream 135158 3126494 ~ 3131561 (+)
CI01000004_03275086_03275655 RPL5 coding downstream 3524 3275086 ~ 3275702 (+)
CI01000004_03311105_03322167 MTF2 coding downstream 39543 3311105 ~ 3322802 (+)
CI01000004_03324524_03348961 CCDC18 coding downstream 52962 3324524 ~ 3349113 (+)
CI01000004_03361436_03375825 SCINLB coding downstream 89356 3360918 ~ 3376605 (+)
CI01000004_03378562_03405135 WLS coding downstream 107000 3378562 ~ 3406001 (+)
G26182 NA non-coding upstream 31 3266477 ~ 3266688 (+)
G26159 NA non-coding upstream 30275 3182484 ~ 3236444 (+)
G26171 NA non-coding upstream 47941 3217822 ~ 3218778 (+)
G26147 NA non-coding upstream 169565 3096857 ~ 3097154 (+)
G26128 NA non-coding upstream 196481 3070002 ~ 3070238 (+)
G26184 NA non-coding downstream 8331 3279893 ~ 3280094 (+)
G26185 NA non-coding downstream 11342 3282904 ~ 3283164 (+)
G26186 NA non-coding downstream 14264 3285826 ~ 3286162 (+)
G26187 NA non-coding downstream 16044 3287606 ~ 3287980 (+)
G26199 NA non-coding downstream 38234 3309796 ~ 3310031 (+)
CI01000004_02745885_02768971 NA other upstream 507781 2745885 ~ 2769135 (+)
G25992 NA other upstream 529951 2736536 ~ 2736768 (+)
G25882 NA other upstream 693670 2548075 ~ 2573049 (+)
G25329 NA other upstream 1181012 2083057 ~ 2085707 (+)
CI01000004_01867166_01868986 C7H1ORF21 other upstream 1393361 1867166 ~ 1868986 (+)
G26245 NA other downstream 237455 3509017 ~ 3522393 (+)
CI01000004_03550525_03552621 PTGER4C other downstream 279486 3550329 ~ 3553423 (+)
G27805 NA other downstream 2101263 5372825 ~ 5373803 (+)
G28165 NA other downstream 2461027 5732589 ~ 5733001 (+)
G28302 NA other downstream 3198466 6470028 ~ 6502087 (+)

Expression


Co-expression Network